RNA id: TU1090522


Basic Information

Item Value
RNA id TU1090522
length 225
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G956484
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23261142 ~ 23261366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGACCCAGAGCTCTATGTACTCTATGTACCACTGCTGGGTCCTGGATCCGACTGTGTGGATCAATACTCGCCTCCATGGTTGCTGGCGTTTCATATAGGTGCCTCGTCAATACCTTTGATCAGGGACTGGCCTAGTCTGGGATGAGAGAGGCTACTAGTAAATCACTGATGCCTCAATTTCGTGTAGCATACTGTCATGTAATGGTTGGTGGTGGTCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090518 lncRNA upstream 4746 23256033 ~ 23256396 (+) True G956480
TU1090502 lncRNA upstream 13415 23247433 ~ 23247727 (+) True G956465
TU1089908 lncRNA upstream 76914 23179974 ~ 23184228 (+) True G955919
TU1089842 lncRNA upstream 187681 23054117 ~ 23073461 (+) True G955854
TU1089817 lncRNA upstream 197129 23007660 ~ 23064013 (+) True G955830
TU1090523 lncRNA downstream 290 23261656 ~ 23261858 (+) True G956485
TU1090534 lncRNA downstream 10078 23271444 ~ 23271804 (+) True G956494
TU1090537 lncRNA downstream 10982 23272348 ~ 23275299 (+) False G956496
TU1090541 lncRNA downstream 11506 23272872 ~ 23275120 (+) False G956496
TU1090542 lncRNA downstream 11506 23272872 ~ 23275120 (+) False G956496
XM_021620520.2 mRNA upstream 294339 22951161 ~ 22966803 (+) False ptbp2a
XM_021620521.2 mRNA upstream 294339 22951161 ~ 22966803 (+) True ptbp2a
XM_021620517.2 mRNA upstream 504165 22750723 ~ 22756977 (+) False LOC110535493
XM_036935203.1 mRNA downstream 68384 23329750 ~ 23365999 (+) False snx7
XM_036935204.1 mRNA downstream 68387 23329753 ~ 23365999 (+) False snx7
XM_036935205.1 mRNA downstream 76480 23337846 ~ 23365999 (+) True snx7
XM_021620525.2 mRNA downstream 120163 23381529 ~ 23387293 (+) False LOC110535498
XR_005034600.1 mRNA downstream 213769 23475135 ~ 23477150 (+) True LOC118937334
TU1089657 other upstream 519895 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3491789 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4134057 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 6659250 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6715853 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 403922 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 514406 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 1339105 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1533234 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3452259 26713625 ~ 26797294 (+) False G960696

Expression Profile