RNA id: TU1090573


Basic Information

Item Value
RNA id TU1090573
length 209
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G956507
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23283357 ~ 23283565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacagaggagtggcttccgtctggccactctaccataaagtcctgattggtggagtgctgcagagatggttgtccttctggaaggttctcctatctccacagatgaactctggagctctgtcagagtgaccatctggttcttggtcacctccctgaccaaggcccttctccctgattcctcagtttggccgggcagccagctctagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090555 lncRNA upstream 5709 23277204 ~ 23277648 (+) True G956498
TU1090554 lncRNA upstream 6760 23276382 ~ 23276597 (+) True G956497
TU1090542 lncRNA upstream 8237 23272872 ~ 23275120 (+) False G956496
TU1090631 lncRNA downstream 75336 23358901 ~ 23359868 (+) True G956564
TU1090636 lncRNA downstream 86752 23370317 ~ 23370563 (+) True G956569
TU1090608 lncRNA downstream 101714 23385279 ~ 23387901 (+) True LOC110535498
TU1090665 lncRNA downstream 128760 23412325 ~ 23416289 (+) True G956597
TU1090735 lncRNA downstream 209507 23493072 ~ 23493446 (+) True G956657
XM_021620520.2 mRNA upstream 316554 22951161 ~ 22966803 (+) False ptbp2a
XM_021620521.2 mRNA upstream 316554 22951161 ~ 22966803 (+) True ptbp2a
XM_021620517.2 mRNA upstream 526380 22750723 ~ 22756977 (+) False LOC110535493
XM_036935203.1 mRNA downstream 46185 23329750 ~ 23365999 (+) False snx7
XM_036935204.1 mRNA downstream 46188 23329753 ~ 23365999 (+) False snx7
XM_036935205.1 mRNA downstream 54281 23337846 ~ 23365999 (+) True snx7
XM_021620525.2 mRNA downstream 97964 23381529 ~ 23387293 (+) False LOC110535498
XR_005034600.1 mRNA downstream 191570 23475135 ~ 23477150 (+) True LOC118937334
TU1089657 other upstream 542110 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3514004 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4156272 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 6681465 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6738068 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 381723 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 492207 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 1316906 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1511035 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3430060 26713625 ~ 26797294 (+) False G960696

Expression Profile