RNA id: TU1090735


Basic Information

Item Value
RNA id TU1090735
length 375
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G956657
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23493072 ~ 23493446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgataTAGTTTTGCATAGAAGAATGTTTCAAAATCCCTCTtgactgttgtgcaggtctgatcaacaactacagaaaatgtttggttgaggttattactGCAAAAAGGAGGGTTAACTAGTTATTAAATCCACAGGTTCACATACTTTTACCGctctgcactgtgaatgtttacacagtgtgttcagtATAGAcctgaaaacgtataattgtttgtgtgttgttaatataagcagactgtgtttgtctattgttgtgacaaatttatgcagaaattgATCATTTATGCAGAAATCGGTAATTtgaaagggttcacatactttttcttgccagtGTATTCAGGAATGTAGGTTACTCACTAGGCATGGTGTCCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090665 lncRNA upstream 76783 23412325 ~ 23416289 (+) True G956597
TU1090608 lncRNA upstream 105171 23385279 ~ 23387901 (+) True LOC110535498
TU1090636 lncRNA upstream 122509 23370317 ~ 23370563 (+) True G956569
TU1090631 lncRNA upstream 133204 23358901 ~ 23359868 (+) True G956564
TU1090573 lncRNA upstream 209507 23283357 ~ 23283565 (+) True G956507
TU1090760 lncRNA downstream 51048 23544494 ~ 23544728 (+) True G956682
TU1090811 lncRNA downstream 184634 23678080 ~ 23681424 (+) True G956732
TU1090818 lncRNA downstream 194829 23688275 ~ 23688480 (+) True G956739
TU1090823 lncRNA downstream 204333 23697779 ~ 23698068 (+) True G956744
TU1090851 lncRNA downstream 233651 23727097 ~ 23727416 (+) True G956771
XR_005034600.1 mRNA upstream 15922 23475135 ~ 23477150 (+) True LOC118937334
XM_021620525.2 mRNA upstream 105779 23381529 ~ 23387293 (+) False LOC110535498
XM_036935203.1 mRNA upstream 127073 23329750 ~ 23365999 (+) False snx7
XM_036935204.1 mRNA upstream 127073 23329753 ~ 23365999 (+) False snx7
XM_036935205.1 mRNA upstream 127073 23337846 ~ 23365999 (+) True snx7
XM_021620531.2 mRNA downstream 1463 23494909 ~ 23531354 (+) True LOC110535500
XM_021620534.2 mRNA downstream 70229 23563675 ~ 23604917 (+) False palmdb
XM_036935211.1 mRNA downstream 97393 23590839 ~ 23594014 (+) True LOC118936499
XM_021620535.2 mRNA downstream 101992 23595438 ~ 23604917 (+) True palmdb
XM_021620532.2 mRNA downstream 142453 23635899 ~ 23661525 (+) False LOC110535501
TU1089657 other upstream 751825 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3723719 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4365987 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 6891180 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6947783 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 171842 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 282326 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 1107025 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1301154 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3220179 26713625 ~ 26797294 (+) False G960696

Expression Profile