RNA id: TU1093344


Basic Information

Item Value
RNA id TU1093344
length 229
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G959092
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25401803 ~ 25402031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatacagtactgtgcagctgtcttcactgacctggccaaggcttttgactctgtcagtcatcacattcttatcggcagactcaatagccttggcttctcaaatgactgcctcgcctggttcaccaactacttctcagatagagttcagtgtgtcaaatcggagggcctgttgtccggacctctggcagtctctatgggggtgccacagggttcaattctcgagccgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1093308 lncRNA upstream 28001 25372900 ~ 25373802 (+) True G959056
TU1093306 lncRNA upstream 30181 25371393 ~ 25371622 (+) True G959054
TU1093101 lncRNA upstream 66067 25335404 ~ 25335736 (+) True G958851
TU1093099 lncRNA upstream 70550 25328200 ~ 25331253 (+) True G958849
TU1093080 lncRNA upstream 93592 25307604 ~ 25308211 (+) True G958830
TU1093403 lncRNA downstream 48392 25450423 ~ 25450800 (+) True G959150
TU1093409 lncRNA downstream 53141 25455172 ~ 25455401 (+) True G959156
TU1093436 lncRNA downstream 72302 25474333 ~ 25474569 (+) True G959183
TU1093465 lncRNA downstream 90346 25492377 ~ 25492710 (+) True G959212
TU1093633 lncRNA downstream 222400 25624431 ~ 25624677 (+) True G959371
XM_021620588.2 mRNA upstream 179138 25194453 ~ 25222665 (+) False pfkpa
XM_021620593.2 mRNA downstream 326030 25728061 ~ 25730806 (+) True fzd8a
XM_036935233.1 mRNA downstream 432942 25834973 ~ 25856075 (+) False LOC110536590
XM_036935235.1 mRNA downstream 432943 25834974 ~ 25856075 (+) False LOC110536590
XM_036935234.1 mRNA downstream 432944 25834975 ~ 25856195 (+) True LOC110536590
XM_036935238.1 mRNA downstream 456814 25858845 ~ 26400935 (+) False LOC110535542
TU1092512 other upstream 606067 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 800150 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 1624958 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 1735873 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 2660556 22726553 ~ 22741247 (+) True tlcd4a
TU1095116 other downstream 1311594 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 1347389 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 1526645 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 2006971 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 2007076 27409107 ~ 27412903 (+) True bambia

Expression Profile