RNA id: TU1093436


Basic Information

Item Value
RNA id TU1093436
length 237
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G959183
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25474333 ~ 25474569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacaaggtaggacaattatgtggatatattgaaacaacatctcaagacgtcagtcaggaagttaaatcttggtcgcaaatgggtcttccaaatggacaattaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagacaaggtattggagtggccatcacaaagccctgatctcaatcccatagaaaatgtgtgggaagaactgaaaaagcatgtgtgag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1093409 lncRNA upstream 18932 25455172 ~ 25455401 (+) True G959156
TU1093403 lncRNA upstream 23533 25450423 ~ 25450800 (+) True G959150
TU1093344 lncRNA upstream 72302 25401803 ~ 25402031 (+) True G959092
TU1093308 lncRNA upstream 100531 25372900 ~ 25373802 (+) True G959056
TU1093306 lncRNA upstream 102711 25371393 ~ 25371622 (+) True G959054
TU1093465 lncRNA downstream 17808 25492377 ~ 25492710 (+) True G959212
TU1093633 lncRNA downstream 149862 25624431 ~ 25624677 (+) True G959371
TU1093664 lncRNA downstream 170980 25645549 ~ 25645782 (+) True G959401
TU1093717 lncRNA downstream 209480 25684049 ~ 25684272 (+) True G959454
TU1093726 lncRNA downstream 214195 25688764 ~ 25688988 (+) True G959463
XM_021620588.2 mRNA upstream 251668 25194453 ~ 25222665 (+) False pfkpa
XM_021620593.2 mRNA downstream 253492 25728061 ~ 25730806 (+) True fzd8a
XM_036935233.1 mRNA downstream 360404 25834973 ~ 25856075 (+) False LOC110536590
XM_036935235.1 mRNA downstream 360405 25834974 ~ 25856075 (+) False LOC110536590
XM_036935234.1 mRNA downstream 360406 25834975 ~ 25856195 (+) True LOC110536590
XM_036935238.1 mRNA downstream 384276 25858845 ~ 26400935 (+) False LOC110535542
TU1092512 other upstream 678597 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 872680 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 1697488 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 1808403 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 2733086 22726553 ~ 22741247 (+) True tlcd4a
TU1095116 other downstream 1239056 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 1274851 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 1454107 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 1934433 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 1934538 27409107 ~ 27412903 (+) True bambia

Expression Profile