RNA id: TU1093717


Basic Information

Item Value
RNA id TU1093717
length 224
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G959454
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25684049 ~ 25684272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtgcacctgtgtaatgatcatgctgtttaatcagcttcttgatatgccacacctgtcagatgcatggattatcttggcaaacagggatgtaaaaaaaaatagaatcaaatcaaaatgtattggtcacatacacatatttagcagatgttattgtgggtgtagcgaaatgcttgtattcctagctccaacagtgcagaagTATCTAAAAAtgtacaacaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1093664 lncRNA upstream 38267 25645549 ~ 25645782 (+) True G959401
TU1093633 lncRNA upstream 59372 25624431 ~ 25624677 (+) True G959371
TU1093465 lncRNA upstream 191339 25492377 ~ 25492710 (+) True G959212
TU1093436 lncRNA upstream 209480 25474333 ~ 25474569 (+) True G959183
TU1093409 lncRNA upstream 228648 25455172 ~ 25455401 (+) True G959156
TU1093726 lncRNA downstream 4492 25688764 ~ 25688988 (+) True G959463
TU1093727 lncRNA downstream 5064 25689336 ~ 25689703 (+) True G959464
TU1093778 lncRNA downstream 84783 25769055 ~ 25769839 (+) True G959510
TU1093926 lncRNA downstream 373881 26058153 ~ 26072686 (+) True G959637
TU1093952 lncRNA downstream 412778 26097050 ~ 26154913 (+) True G959659
XM_021620588.2 mRNA upstream 461384 25194453 ~ 25222665 (+) False pfkpa
XM_021620593.2 mRNA downstream 43789 25728061 ~ 25730806 (+) True fzd8a
XM_036935233.1 mRNA downstream 150701 25834973 ~ 25856075 (+) False LOC110536590
XM_036935235.1 mRNA downstream 150702 25834974 ~ 25856075 (+) False LOC110536590
XM_036935234.1 mRNA downstream 150703 25834975 ~ 25856195 (+) True LOC110536590
XM_036935238.1 mRNA downstream 174573 25858845 ~ 26400935 (+) False LOC110535542
TU1092512 other upstream 888313 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 1082396 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 1907204 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 2018119 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 2942802 22726553 ~ 22741247 (+) True tlcd4a
TU1095116 other downstream 1029353 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 1065148 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 1244404 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 1724730 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 1724835 27409107 ~ 27412903 (+) True bambia

Expression Profile