RNA id: TU1094172


Basic Information

Item Value
RNA id TU1094172
length 352
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G959852
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26440942 ~ 26441293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgactttcagccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactaaacaattggataccacaaaattggggagaaaaaggggtcaaattcaaaaaggctttacgacgaaagcgattatgttaggtcagcacctagtcacagaaaaacacagccatttttccagccaaagagaggagtcacaaaaagcagaaatatagataaaatgaatcactaacctttgatgatcttcatcagatgacagtcataggacttcatgttacacaatacatgtatttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1093803 lncRNA upstream 39311 26400575 ~ 26401631 (+) True LOC110535542
TU1093952 lncRNA upstream 286029 26097050 ~ 26154913 (+) True G959659
TU1093926 lncRNA upstream 368256 26058153 ~ 26072686 (+) True G959637
TU1093778 lncRNA upstream 671103 25769055 ~ 25769839 (+) True G959510
TU1093727 lncRNA upstream 751239 25689336 ~ 25689703 (+) True G959464
TU1094869 lncRNA downstream 73703 26514996 ~ 26515221 (+) True G960486
TU1095028 lncRNA downstream 216432 26657725 ~ 26690205 (+) True G960633
TU1095093 lncRNA downstream 259659 26700952 ~ 26701181 (+) True G960689
TU1095094 lncRNA downstream 260757 26702050 ~ 26702275 (+) True G960690
TU1095149 lncRNA downstream 305746 26747039 ~ 26747931 (+) True G960728
XM_036935238.1 mRNA upstream 40007 25858845 ~ 26400935 (+) False LOC110535542
XM_036935240.1 mRNA upstream 40007 25858845 ~ 26400935 (+) False LOC110535542
XM_036935237.1 mRNA upstream 40007 25916832 ~ 26400935 (+) False LOC110535542
XM_036935239.1 mRNA upstream 40007 25916833 ~ 26400935 (+) False LOC110535542
XM_036935234.1 mRNA upstream 584747 25834975 ~ 25856195 (+) True LOC110536590
XM_036935242.1 mRNA downstream 176855 26618148 ~ 26700276 (+) False LOC110536591
XM_036935241.1 mRNA downstream 178288 26619581 ~ 26700276 (+) False LOC110536591
XM_036935244.1 mRNA downstream 178290 26619583 ~ 26700276 (+) False LOC110536591
XM_036935243.1 mRNA downstream 178310 26619603 ~ 26700276 (+) True LOC110536591
XM_036935246.1 mRNA downstream 272302 26713595 ~ 26751558 (+) True LOC118936350
TU1092512 other upstream 1645206 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 1839289 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 2664097 23775772 ~ 23776845 (+) True G956797
TU1090807 other upstream 2775012 23665288 ~ 23665930 (+) True G956728
TU1089657 other upstream 3699695 22726553 ~ 22741247 (+) True tlcd4a
TU1095116 other downstream 272332 26713625 ~ 26797294 (+) False G960696
TU1095111 other downstream 308127 26749420 ~ 26751554 (+) True G960696
TU1095242 other downstream 487383 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 967709 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 967814 27409107 ~ 27412903 (+) True bambia

Expression Profile