RNA id: TU1095201


Basic Information

Item Value
RNA id TU1095201
length 202
lncRNA type intronic
GC content 0.55
exon number 1
gene id G960776
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26858247 ~ 26858448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caactggatcctggacttcctgtcgggtagcccccaggtggtaagggttggcaacaacacatctgccactttgatcctcaacacgggggcccctcagggttgcgtgcttagtgccctcctgtactctctgttcacccacgacttccccaggagactgaaaagatttggcatgggtcctcagatcctcaaaaagttctacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1095159 lncRNA upstream 88063 26769365 ~ 26770184 (+) True G960735
TU1095149 lncRNA upstream 110316 26747039 ~ 26747931 (+) True G960728
TU1095094 lncRNA upstream 155972 26702050 ~ 26702275 (+) True G960690
TU1095093 lncRNA upstream 157066 26700952 ~ 26701181 (+) True G960689
TU1095028 lncRNA upstream 168042 26657725 ~ 26690205 (+) True G960633
TU1095203 lncRNA downstream 2159 26860607 ~ 26860822 (+) True G960778
TU1095205 lncRNA downstream 3317 26861765 ~ 26862343 (+) True G960780
TU1095206 lncRNA downstream 4890 26863338 ~ 26863564 (+) True G960781
TU1095208 lncRNA downstream 8917 26867365 ~ 26867597 (+) True G960783
TU1095209 lncRNA downstream 9949 26868397 ~ 26868673 (+) True G960784
XM_021620609.2 mRNA upstream 34425 26812026 ~ 26823822 (+) True rab18a
XM_021620606.2 mRNA upstream 48283 26760317 ~ 26809964 (+) True LOC110535543
XM_036935246.1 mRNA upstream 106689 26713595 ~ 26751558 (+) True LOC118936350
XM_036935242.1 mRNA upstream 157971 26618148 ~ 26700276 (+) False LOC110536591
XM_036935253.1 mRNA downstream 499318 27357766 ~ 27401629 (+) False waca
NM_001160484.1 mRNA downstream 551105 27409553 ~ 27412913 (+) False bambia
XR_002475481.2 mRNA downstream 734678 27593126 ~ 27597600 (+) True LOC110536609
XM_021620616.2 mRNA downstream 880933 27739381 ~ 27764170 (+) False mtpap
XM_036935257.1 mRNA downstream 951601 27810049 ~ 27845341 (+) False jcada
TU1095116 other upstream 60953 26713625 ~ 26797294 (+) False G960696
TU1095111 other upstream 106693 26749420 ~ 26751554 (+) True G960696
TU1092512 other upstream 2062511 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 2256594 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 3081402 23775772 ~ 23776845 (+) True G956797
TU1095242 other downstream 70228 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 550554 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 550659 27409107 ~ 27412903 (+) True bambia
TU1096304 other downstream 904540 27762988 ~ 27765414 (+) True mtpap
TU1096389 other downstream 970298 27828746 ~ 27829177 (+) True G961864

Expression Profile