RNA id: TU1095208


Basic Information

Item Value
RNA id TU1095208
length 233
lncRNA type intronic
GC content 0.41
exon number 1
gene id G960783
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26867365 ~ 26867597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCTCTATGAGTCCCCGGGGTCCTGTCAAACACTACTGTTTTCATTTAACATATTTCGTCATCGTTAAATGTAACAAGTCACTTTAATGCTATAAAATACAGGTGAGCTTCAATCTTAACGCGTTGTGTGTCCTGGAAACGTCTTGAGCAACCTATCTGTCTGAGAAAATGGGGCGAATGGAAAAAGTGTGTTCCTCTCGAAATTACTGAGACGTTTTGGCCCTCTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1095206 lncRNA upstream 3801 26863338 ~ 26863564 (+) True G960781
TU1095205 lncRNA upstream 5022 26861765 ~ 26862343 (+) True G960780
TU1095203 lncRNA upstream 6543 26860607 ~ 26860822 (+) True G960778
TU1095201 lncRNA upstream 8917 26858247 ~ 26858448 (+) True G960776
TU1095159 lncRNA upstream 97181 26769365 ~ 26770184 (+) True G960735
TU1095209 lncRNA downstream 800 26868397 ~ 26868673 (+) True G960784
TU1095212 lncRNA downstream 5413 26873010 ~ 26873337 (+) True G960787
TU1095226 lncRNA downstream 31360 26898957 ~ 26899735 (+) False G960800
TU1095225 lncRNA downstream 31561 26899158 ~ 26899796 (+) True G960800
TU1095244 lncRNA downstream 63085 26930682 ~ 26930885 (+) True G960818
XM_021620609.2 mRNA upstream 43543 26812026 ~ 26823822 (+) True rab18a
XM_021620606.2 mRNA upstream 57401 26760317 ~ 26809964 (+) True LOC110535543
XM_036935246.1 mRNA upstream 115807 26713595 ~ 26751558 (+) True LOC118936350
XM_036935244.1 mRNA upstream 167089 26619583 ~ 26700276 (+) False LOC110536591
XM_036935253.1 mRNA downstream 490169 27357766 ~ 27401629 (+) False waca
NM_001160484.1 mRNA downstream 541956 27409553 ~ 27412913 (+) False bambia
XR_002475481.2 mRNA downstream 725529 27593126 ~ 27597600 (+) True LOC110536609
XM_021620616.2 mRNA downstream 871784 27739381 ~ 27764170 (+) False mtpap
XM_036935257.1 mRNA downstream 942452 27810049 ~ 27845341 (+) False jcada
TU1095116 other upstream 70071 26713625 ~ 26797294 (+) False G960696
TU1095111 other upstream 115811 26749420 ~ 26751554 (+) True G960696
TU1092512 other upstream 2071629 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 2265712 24600471 ~ 24601653 (+) True G957942
TU1090885 other upstream 3090520 23775772 ~ 23776845 (+) True G956797
TU1095242 other downstream 61079 26928676 ~ 26929027 (+) True G960816
TU1095841 other downstream 541405 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 541510 27409107 ~ 27412903 (+) True bambia
TU1096304 other downstream 895391 27762988 ~ 27765414 (+) True mtpap
TU1096389 other downstream 961149 27828746 ~ 27829177 (+) True G961864

Expression Profile