RNA id: TU1095248


Basic Information

Item Value
RNA id TU1095248
length 244
lncRNA type antisense_over
GC content 0.58
exon number 1
gene id G960822
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26936102 ~ 26936345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGGCTGTAGTGATAATGAGGGTTAATAATaatgggaaggagagaaggagggagggatgcctggatggagggagagggaggggtaacGTTACTTAGCCACGTTCTCCATGCTGATGGAGCACTTCCAGATGGCCCCAGTGGTGGCAGCCAGGAGCTGCTTGTTGTCTGCCTGGCTCAGCAGAGTCACCAGGGGCTGCAGGCCCTCGCACTGACGCACCAGGTCACGGGTACGCTTGTCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1095244 lncRNA upstream 5217 26930682 ~ 26930885 (+) True G960818
TU1095225 lncRNA upstream 36306 26899158 ~ 26899796 (+) True G960800
TU1095226 lncRNA upstream 36367 26898957 ~ 26899735 (+) False G960800
TU1095212 lncRNA upstream 62765 26873010 ~ 26873337 (+) True G960787
TU1095209 lncRNA upstream 67429 26868397 ~ 26868673 (+) True G960784
TU1095249 lncRNA downstream 484 26936829 ~ 26937059 (+) True G960823
TU1095250 lncRNA downstream 1748 26938093 ~ 26938429 (+) True G960824
TU1095254 lncRNA downstream 9090 26945435 ~ 26945667 (+) True G960828
TU1095257 lncRNA downstream 13589 26949934 ~ 26950145 (+) True G960831
TU1095263 lncRNA downstream 18904 26955249 ~ 26955472 (+) True G960837
XM_021620609.2 mRNA upstream 112280 26812026 ~ 26823822 (+) True rab18a
XM_021620606.2 mRNA upstream 126138 26760317 ~ 26809964 (+) True LOC110535543
XM_036935246.1 mRNA upstream 184544 26713595 ~ 26751558 (+) True LOC118936350
XM_036935244.1 mRNA upstream 235826 26619583 ~ 26700276 (+) False LOC110536591
XM_036935253.1 mRNA downstream 421421 27357766 ~ 27401629 (+) False waca
NM_001160484.1 mRNA downstream 473208 27409553 ~ 27412913 (+) False bambia
XR_002475481.2 mRNA downstream 656781 27593126 ~ 27597600 (+) True LOC110536609
XM_021620616.2 mRNA downstream 803036 27739381 ~ 27764170 (+) False mtpap
XM_036935257.1 mRNA downstream 873704 27810049 ~ 27845341 (+) False jcada
TU1095242 other upstream 7075 26928676 ~ 26929027 (+) True G960816
TU1095116 other upstream 138808 26713625 ~ 26797294 (+) False G960696
TU1095111 other upstream 184548 26749420 ~ 26751554 (+) True G960696
TU1092512 other upstream 2140366 24794600 ~ 24795736 (+) True G958300
TU1092128 other upstream 2334449 24600471 ~ 24601653 (+) True G957942
TU1095841 other downstream 472657 27409002 ~ 27412903 (+) False bambia
TU1095839 other downstream 472762 27409107 ~ 27412903 (+) True bambia
TU1096304 other downstream 826643 27762988 ~ 27765414 (+) True mtpap
TU1096389 other downstream 892401 27828746 ~ 27829177 (+) True G961864
TU1096561 other downstream 960821 27897166 ~ 27941575 (+) True G961984

Expression Profile