RNA id: TU1096013


Basic Information

Item Value
RNA id TU1096013
length 203
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G961514
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27650216 ~ 27650418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCAAGCAACTTGGATGCAGTGTTGCAGTACAATCATCTGATGCTAATTTGGTGATACACGAAGCATCTCAAACAGCATTTTGTATTATCTCGCATTTGGCATGTATCTTGTAATGTGATTCACAGCAGCAGTGATGCatgtgttgacatgacaactgcGTCAGAGTTTTAAATGACCCTTCCTTCCCTTTTGTTCAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096001 lncRNA upstream 17732 27632166 ~ 27632484 (+) True G961502
TU1095858 lncRNA upstream 229092 27420918 ~ 27421124 (+) True G961364
TU1095851 lncRNA upstream 244010 27405995 ~ 27406206 (+) True G961357
TU1095837 lncRNA upstream 248596 27398347 ~ 27401620 (+) True waca
TU1095836 lncRNA upstream 292496 27357510 ~ 27357720 (+) True G961345
TU1096259 lncRNA downstream 34872 27685290 ~ 27685530 (+) True G961739
TU1096289 lncRNA downstream 64724 27715142 ~ 27715487 (+) True G961769
TU1096388 lncRNA downstream 178043 27828461 ~ 27828660 (+) True G961863
TU1096395 lncRNA downstream 183692 27834110 ~ 27834331 (+) True G961870
TU1096472 lncRNA downstream 201986 27852404 ~ 27852634 (+) True G961942
XR_002475481.2 mRNA upstream 52616 27593126 ~ 27597600 (+) True LOC110536609
NM_001160484.1 mRNA upstream 237303 27409553 ~ 27412913 (+) False bambia
XM_036935253.1 mRNA upstream 248587 27357766 ~ 27401629 (+) False waca
XM_021620609.2 mRNA upstream 826394 26812026 ~ 26823822 (+) True rab18a
XM_021620606.2 mRNA upstream 840252 26760317 ~ 26809964 (+) True LOC110535543
XM_021620616.2 mRNA downstream 88963 27739381 ~ 27764170 (+) False mtpap
XM_036935257.1 mRNA downstream 159631 27810049 ~ 27845341 (+) False jcada
XM_036935258.1 mRNA downstream 159631 27810049 ~ 27845341 (+) False jcada
XM_021620617.2 mRNA downstream 159632 27810050 ~ 27845341 (+) True jcada
XM_036935274.1 mRNA downstream 216608 27867026 ~ 28011031 (+) False svila
TU1095841 other upstream 237313 27409002 ~ 27412903 (+) False bambia
TU1095839 other upstream 237313 27409107 ~ 27412903 (+) True bambia
TU1095242 other upstream 721189 26928676 ~ 26929027 (+) True G960816
TU1095116 other upstream 852922 26713625 ~ 26797294 (+) False G960696
TU1096304 other downstream 112570 27762988 ~ 27765414 (+) True mtpap
TU1096389 other downstream 178328 27828746 ~ 27829177 (+) True G961864
TU1096561 other downstream 246748 27897166 ~ 27941575 (+) True G961984
TU1096688 other downstream 482203 28132621 ~ 28214484 (+) False LOC110535556
TU1096685 other downstream 577110 28227528 ~ 28229401 (+) True G962100

Expression Profile