RNA id: TCONS_00039797


Basic Information

Item Value
RNA id TCONS_00039797
length 1866
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_019954
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1480988 ~ 1515020 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATGTTTAAGTGGTCAAATGTTTTTGCACCTCAGTTTTTAGACCACAAGTCTGTTTCACCTAAACCTTTTCTAACgttattaataattttagattAGAGACTATGcttgagcaccatctgctgttacacactgacatgtaacttaataatttaattttcagatgtgaaggtgaaggaggagagtgaagcaccgagtgaagatgaggagaaacatcatgtcaaaagtGAAGAAGAAACTCACACAAGCACTGAACACAGTGTTTTGCTGAACAGCACAGCTGTAAACGGCTTCACCTGCACTGAATGTGGAAAGCGTTTTGGGTGCAAATACGGTCTCAAGtaccacatgaagatccacactggagggaaagtgtacaagtgttcacactgcgacaagacatTCTGTACGCTGGTACAACTGAGGGCGCACAAGAAGATTCACGCTAAAGGGTTTCTCTGCGTTgcttgtgggaagagtttcagggaTAAATTTTCTCTACGAAGACACACGCGCAAATATCACGAGCCGAATGAAGACATGAAGACCTGCTTAAACGTTCATTTAAAGTTGAAGCAGTTTTTGTGCTCtttgtgtggaaagagtttcaatcGTTCACACAGTTTAAAGAAACacgagaggactcacactggagagagaccttaCAAGTgctcacactgcgacaagacatTCAATGAGTTAGGAAGTCTGAAAGCGCATGAGATGAATCACACCGGAGAGAGACCGTACACGTGCACTCAGTGTTGGAAGAGTTTCACAcgatcatcaaaccttaatcggcacatgatgatccacactggagagaaaccgcacCAATGTGATCAATGCGGCAAGACATTTTCAAGGCCATCAGAGCTGAAGATCCATCTTATAGTTCATACAGAGCAGAAGCCTTATTCATGctctgagtgtgggaagagtttcctaAGAAAGTCAGTATTCAGAAAACAtgagaagatccacactggagagaaaccttacaagtgttcacactgcgatgAGAGATTCTGTAAGTTAGGTCAACTGAAAGCACATGAGAAGAGTCACACTAAAGAGAAGCTGTTCCTCTGCATTGCTTGCGGGAAGCGTTTCAGGGAAATATTTTCTctacaaagacacacacaaaaatatcacGAACTGAGTGAAGACATGAAGAATTACTTTGAAGTTCATTTAAAGCTGAAGCCGTTTTCATGCTCtttgtgtggaaagagtttcaatcGTTCACATATACTAAGAAAACATCAGAGGAATcactctggagagaaaccgtacaagtgttcgcACTGCGACAAAACATTCAGTCAGCCAGAGTATCTGAAAAAGCACAAGGTGATTCACACTGGAAGGAAACGTTACAAGTGTTCACGCTGCGAAAAAACATATAGCAATTcagaaaatctgaaaatgcatgaGATGATTCACACCGGAAAGAGACCGCACACATGCGACCAGTGTGGGAAGACATTCGTACGATCATCagaccttaatcgacacatgctgatccacactggagagaaaaaacacaaatgtgatcaatgcggcaAAACATTTCTGAGGACTTCAGATCTGAAGATCCATCTTAGATCTCACACAGAAGATAAACCTTATCCATGCTccgagtgtggaaagagttttaaaagaCAGTCACATTTAAGTAAGCATCAGAAGATGCACGCTGCTGTGAAAGAGCATGTGTGCCTTAAATGTGGGAAGACTTTTAATAAAGCTGGATATTTGAAACAGCACCAGAGGATGCACACTGGAGAAAACACAGATGCggagtgtgggaagagcttcacAAAGTCATCAAACCTCAAACAACATGTGGAGGGAAAACAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000177429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039787 lncRNA upstream 97238 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 116446 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA upstream 152157 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039777 lncRNA upstream 213487 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042009 lncRNA upstream 285959 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00041847 lncRNA downstream 145167 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 212030 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00042012 lncRNA downstream 390982 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 438130 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 438801 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039795 mRNA upstream 9046 1469685 ~ 1472261 (+) True XLOC_019953
TCONS_00039793 mRNA upstream 14740 1462177 ~ 1466567 (+) False XLOC_019952
TCONS_00039794 mRNA upstream 14782 1462997 ~ 1466525 (+) True XLOC_019952
TCONS_00039792 mRNA upstream 39817 1440702 ~ 1441490 (+) True XLOC_019951
TCONS_00039791 mRNA upstream 48279 1431743 ~ 1433028 (+) True XLOC_019950
TCONS_00039802 mRNA downstream 2298 1517318 ~ 1524675 (+) True XLOC_019957
TCONS_00039803 mRNA downstream 11020 1526040 ~ 1531891 (+) False XLOC_019958
TCONS_00039804 mRNA downstream 11024 1526044 ~ 1606312 (+) True XLOC_019958
TCONS_00039805 mRNA downstream 24353 1539373 ~ 1540981 (+) False XLOC_019959
TCONS_00039806 mRNA downstream 25829 1540849 ~ 1555366 (+) False XLOC_019959
TCONS_00039784 other upstream 152161 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039775 other upstream 219035 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other upstream 229647 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039761 other upstream 441558 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 462155 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039812 other downstream 61843 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 115666 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 135108 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 145395 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039823 other downstream 146246 1661266 ~ 1665471 (+) True XLOC_019971

Expression Profile

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