RNA id: TU1096488


Basic Information

Item Value
RNA id TU1096488
length 464
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G961958
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27862993 ~ 27863456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggtgccgtgagagcttcaagttccttggtgtccacatcaccaacaaactaacatggtccaagcacaccaagacagtcgtgaagagggtacgacaaaacctattccccctcaggagactgaaaatatttggcatgggtcctcagatcctcaaaaggttctacagctgcaccatcgagagcatcctgactggttgcatcactgcctggcatggcaactgctcggcctcaaggcactacagagggtagtgtgaatggcccagtacatcactgggtccaagcttcctgccattcaggacgtCCATAcaaggcggtgtcaaaggaaggccctaaaaatggtcaaagaccccagccacccttgtcatagactgttctctctgctaacgcacggcaagcggtactggagcgccaagtctaggtccaagaggcttctaaacagcttctacccccaagccataagacctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096483 lncRNA upstream 2371 27859358 ~ 27860622 (+) True G961953
TU1096472 lncRNA upstream 10359 27852404 ~ 27852634 (+) True G961942
TU1096395 lncRNA upstream 28662 27834110 ~ 27834331 (+) True G961870
TU1096388 lncRNA upstream 34333 27828461 ~ 27828660 (+) True G961863
TU1096289 lncRNA upstream 147506 27715142 ~ 27715487 (+) True G961769
TU1096579 lncRNA downstream 61069 27924525 ~ 27982293 (+) True G962001
TU1096621 lncRNA downstream 179188 28042644 ~ 28053247 (+) False G962043
TU1096623 lncRNA downstream 179188 28042644 ~ 28045682 (+) True G962043
TU1096632 lncRNA downstream 193632 28057088 ~ 28070019 (+) True G962051
TU1096748 lncRNA downstream 346912 28210368 ~ 28211512 (+) True G962152
XM_036935257.1 mRNA upstream 17652 27810049 ~ 27845341 (+) False jcada
XM_036935258.1 mRNA upstream 17652 27810049 ~ 27845341 (+) False jcada
XM_021620617.2 mRNA upstream 17652 27810050 ~ 27845341 (+) True jcada
XM_021620616.2 mRNA upstream 98823 27739381 ~ 27764170 (+) False mtpap
XR_002475481.2 mRNA upstream 265393 27593126 ~ 27597600 (+) True LOC110536609
XM_036935274.1 mRNA downstream 3570 27867026 ~ 28011031 (+) False svila
XM_036935263.1 mRNA downstream 51721 27915177 ~ 28011031 (+) False svila
XM_036935273.1 mRNA downstream 60074 27923530 ~ 28011031 (+) False svila
XM_036935275.1 mRNA downstream 60074 27923530 ~ 28011031 (+) False svila
XM_036935276.1 mRNA downstream 73421 27936877 ~ 28011031 (+) False svila
TU1096389 other upstream 33816 27828746 ~ 27829177 (+) True G961864
TU1096304 other upstream 97579 27762988 ~ 27765414 (+) True mtpap
TU1095841 other upstream 450090 27409002 ~ 27412903 (+) False bambia
TU1095839 other upstream 450090 27409107 ~ 27412903 (+) True bambia
TU1095242 other upstream 933966 26928676 ~ 26929027 (+) True G960816
TU1096561 other downstream 33710 27897166 ~ 27941575 (+) True G961984
TU1096688 other downstream 269165 28132621 ~ 28214484 (+) False LOC110535556
TU1096685 other downstream 364072 28227528 ~ 28229401 (+) True G962100
TU1096773 other downstream 385871 28249327 ~ 28249912 (+) True LOC110535556
TU1100642 other downstream 2955382 30818838 ~ 30821252 (+) True G965838

Expression Profile