RNA id: TU1096685


Basic Information

Item Value
RNA id TU1096685
length 1874
RNA type TUCP
GC content 0.39
exon number 1
gene id G962100
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28227528 ~ 28229401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttgaatgagtaggtgtgttcacacttgactgtgtgtgtgtatctgtttgtTAAAACTATGTAAATTAACATAATACTGGTAGAAACACAGGCATATTGTACCTAAAATCTATTGGCCTTGAAAACAGTCATCCCATCTATGGTAAATGATTGACTAAAGTCTAGGTTGTGGCTTTAGGGACAAAACTTTCCAATTCAACTGTGTGTTGCAGGATCCTCTCTAGCTATTTTGACCTAAAGAGGACAACCTTCTCAGTACACCAACACCTGACAGAAACGTCTGAGGCCTTCTGAAAAATTCTAGTCTCGAGATCTACCCATACATCTGGCTCATACCCAACATCGACATTTAAACagattatatataattatatacactgagtgtacaaacattaagGACGCCTTCTTAACATtgagccctcagaacagccttgattcgttggggcatggactctacaaggtgtcgaaagcgctccacagggatgctggctcatgttgactccaatgcttcccaaagttgtcaagttggctggatgtcctttgggtggtggaccattcttgatacacacgggaaactgttgagtgtggaaaaacccagaggcattgcagttcttcacacgctcaaaccggtgcgcctggcacctgctatcataccccgtttaaaggtacttaaatattttgtcttgctcattcaccctcttaatggcacacaacacacaatccatgtctcacttGTCTCGAggcttgaagtggatttaacatccataagggatcatagctttcatccgGATTCACCTGGTGAGTCTTATCTATATTTCTGTTTGTGTACTCTGGTAATGGAAAGGGTGAATGATTGATAACCACTGACAAAACTAGATCTATTTGTTACTATTACATTATGAAGAAGTTATGAAAGCATTGAACGAATGCTGCTAGCTTTTATTCAGTTTAAACCTGTGGAATTGGGGCACCTGAGGTCTGATGTTATAGAGACTGAAGTAATGCATGTTTTATGCCTATTTGTGATTGGAACCCCAGCAGAAAAGGCTGTTTTCTCTTCTGTTTGCTTCTTACAAATGGGGAATGTTCAGTGTTGTTTCCTGGTTGGGATAGGGAATTGTAAAGGGTCGTAGATGTGGTTTAAACATTTGTCAGACTGTGTAACCTTTTCatacaacaaaaaaatcacaGGGTAAGTTAAGTGAATGTTTCAAAACCCTaccaaattctctctctctctctctctatatatattaaatatagattagattatatatagccatgtataaatacagtatattgagaaTATATATTTGCATAGAATATATAGTGAATATTCTGCTTTGTTCCAATGGAGGAAACAAACTAGATGGGATTTTGTCATCATCAAACCGGCAACTTAAGCTGAGTATAGCTCTCCTTGCTTGTCTGACACAAACCAGGGTACATTCCAAATGACActgtattccctatatactgaagtgcactacttttaatcatGGCCCCTAGTGCTCTCTTCAAAAgaatgtagggaatggggtgccacttgggacacatGTCAGGAAGAAGCAACAATGAGAAAGAACTCGCCTACCATAGTGAGGCTAGACTTGCAGCACAGACAAATCAATGGTGTGAAAAGTAATCACATAGCTAATATGTCTTTCACAAAATGGTGGCTGTGTTGACTGGCTGAAAGTGTTTGATTGTGGCTGTTTGTGAACCTAAAAACCTTACCTTTCccggaataaaacaaacatatgCTTGATTGAATATGACAAGGACTGTGTGACGTATCTAACAAGATAACAAATAAATGCATATTTATTTCCAGTGACAGTATGTTTTCCCTGCTCAGGTAACTGTAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096748 lncRNA upstream 16016 28210368 ~ 28211512 (+) True G962152
TU1096632 lncRNA upstream 157509 28057088 ~ 28070019 (+) True G962051
TU1096621 lncRNA upstream 174281 28042644 ~ 28053247 (+) False G962043
TU1096623 lncRNA upstream 181846 28042644 ~ 28045682 (+) True G962043
TU1096579 lncRNA upstream 245235 27924525 ~ 27982293 (+) True G962001
TU1096755 lncRNA downstream 2862 28232263 ~ 28232466 (+) True G962159
TU1096759 lncRNA downstream 5888 28235289 ~ 28235532 (+) True G962163
TU1096762 lncRNA downstream 9114 28238515 ~ 28238743 (+) True G962166
TU1096765 lncRNA downstream 12837 28242238 ~ 28242464 (+) True G962169
TU1096767 lncRNA downstream 16215 28245616 ~ 28245818 (+) True G962171
XM_021620622.2 mRNA upstream 1471 28132124 ~ 28226057 (+) False LOC110535556
XM_021620623.2 mRNA upstream 1471 28132124 ~ 28226057 (+) False LOC110535556
XM_036935286.1 mRNA upstream 1471 28132124 ~ 28226057 (+) False LOC110535556
XM_036935287.1 mRNA upstream 1471 28132124 ~ 28226057 (+) False LOC110535556
XM_036935285.1 mRNA upstream 1471 28169147 ~ 28226057 (+) False LOC110535556
XR_002475482.2 mRNA downstream 262261 28491662 ~ 28492824 (+) False LOC110536610
LOC118937385 mRNA downstream 269709 28499110 ~ 28506016 (+) True LOC118937385
XM_021620633.2 mRNA downstream 2859463 31088864 ~ 31169983 (+) True LOC110535568
XM_021620636.2 mRNA downstream 3524468 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 3524468 31753869 ~ 31789350 (+) False LOC110535570
TU1096688 other upstream 13044 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 285953 27897166 ~ 27941575 (+) True G961984
TU1096389 other upstream 398351 27828746 ~ 27829177 (+) True G961864
TU1096304 other upstream 462114 27762988 ~ 27765414 (+) True mtpap
TU1095841 other upstream 814625 27409002 ~ 27412903 (+) False bambia
TU1096773 other downstream 19926 28249327 ~ 28249912 (+) True LOC110535556
TU1100642 other downstream 2589437 30818838 ~ 30821252 (+) True G965838
TU1103506 other downstream 5154642 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 5228960 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 5229138 33458539 ~ 33473867 (+) True LOC110535592

Expression Profile