RNA id: TCONS_00039801


Basic Information

Item Value
RNA id TCONS_00039801
length 408
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_019956
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1501566 ~ 1511181 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGCGTAACGAAGACATGAAGAATCACTTTAATGTTCATTCAACGATGAAACATTTTTCATGCTGTTTGTGTGGAAAGAGCTACAATCATCCACACAGTTTAAGAAGACATCAgacgatccacactggagagagaccttaCAAGTGTTCATATTGCGAGAAAACATTCAGTGAGTCAGGAAGTCTGAGATCAcacgagaggattcacactggagagaaaccgttcacatgtactcagtgtgggaagagtttcatacgGTCGTCAGACCGTAATCGACACATGATGACCCACAGCTCTGCCGCCATCaatgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaacaaacaggttg

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080305-13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000164814

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039787 lncRNA upstream 124476 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 143684 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042011 lncRNA upstream 179395 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039777 lncRNA upstream 240725 1261725 ~ 1267820 (+) True XLOC_019938
TCONS_00042009 lncRNA upstream 313197 1194871 ~ 1195348 (+) True XLOC_019937
TCONS_00041847 lncRNA downstream 151075 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00041848 lncRNA downstream 217938 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00042012 lncRNA downstream 396890 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 444038 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 444709 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039799 mRNA upstream 5412 1501566 ~ 1503133 (+) False XLOC_019956
TCONS_00039798 mRNA upstream 15439 1491664 ~ 1493106 (+) True XLOC_019955
TCONS_00039796 mRNA upstream 26714 1480988 ~ 1481831 (+) False XLOC_019954
TCONS_00039795 mRNA upstream 36284 1469685 ~ 1472261 (+) True XLOC_019953
TCONS_00039793 mRNA upstream 41978 1462177 ~ 1466567 (+) False XLOC_019952
TCONS_00039802 mRNA downstream 8206 1517318 ~ 1524675 (+) True XLOC_019957
TCONS_00039803 mRNA downstream 16928 1526040 ~ 1531891 (+) False XLOC_019958
TCONS_00039804 mRNA downstream 16932 1526044 ~ 1606312 (+) True XLOC_019958
TCONS_00039805 mRNA downstream 30261 1539373 ~ 1540981 (+) False XLOC_019959
TCONS_00039806 mRNA downstream 31737 1540849 ~ 1555366 (+) False XLOC_019959
TCONS_00039784 other upstream 179399 1323514 ~ 1329146 (+) True XLOC_019943
TCONS_00039775 other upstream 246273 1249788 ~ 1262272 (+) False XLOC_019938
TCONS_00039776 other upstream 256885 1250239 ~ 1251660 (+) False XLOC_019938
TCONS_00039761 other upstream 468796 1039548 ~ 1039749 (+) True XLOC_019930
TCONS_00039759 other upstream 489393 1018601 ~ 1019152 (+) True XLOC_019929
TCONS_00039812 other downstream 67751 1576863 ~ 1577746 (+) True XLOC_019963
TCONS_00039818 other downstream 121574 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039821 other downstream 141016 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039822 other downstream 151303 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039823 other downstream 152154 1661266 ~ 1665471 (+) True XLOC_019971

Expression Profile

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