RNA id: TU1096863


Basic Information

Item Value
RNA id TU1096863
length 2791
lncRNA type read_through
GC content 0.40
exon number 2
gene id G962253
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28362818 ~ 28429182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACTCTAGGGTAAAATCTTGGGAACCAAGGCTACAGAAAGCACTTGAGGATAACGATGTGCAGAACACTGCAATGCATTGATCTCCCTAGggttatatataaaatatacacacacaatttGCATCATACACAGACAGTGCCGACCATCGTAACCTGGCCAGACCACAAGCTCTCAGACAATCATTTGGTTATTAGTTTACAAACCAAAGACAGAACAACTCCGGTTATGCTTCGCTTATGTGTTTTTCCTTTTGCAGAAAAGGAGCAGAATCGGTATTTGAGCGGTCCTTTATGGCAGGTACAGTTATGACACTTTATGTATCTTGGATTACAATTCAAAAGTGCTTCAGGCTAAAATTTCAACTTCAAATATCACACATGACAAACCAAAAAGTCAGGAGACTGATTCGTTAGTTTTAGTTTGTTTTACTTTTTTTATAATGCAGGTCCCACTCCCTCACCTTAAACCTTCTTCACAATAACTGATCCATATTGCACTCACTATAGTCAGGTCTGTACAGCACTGGGCTATACCAGACAGTCTTCGCAGATGCTTCAGTTTTACACAGTATTGGGAAGGAAGGACAATGTTTTGGATCATTTCATTTTCTAAGCAATGGAGGATACAAAAAAAATAGTCAAATCAATAACggtaaacaaaaaaacaaacaatttaggTAGTTAAAAACAAATGGCAGCGACTAAAGCTTTCATCCTGCCTACACACCAATAAATAACTCAGATGCCATCTATCGACTGTAGCTAGGGGAGGATGGCGTTATGAAGATTGGTGACTGCGTGGACAAGACAGGCTCCGTTCCTACATCCACATTAGCATCCCACTTAGAATGTAATCTTGTTAACTAGACACAATTAGAAGGAGACAAGGTTACTTAGAATGAAGCAATGCATTGGCTAGTTTGGGCATGTGAGTGTTGACGCAGATCCCAATTCACCAGTCCCCCAAGCAAACCCCTGCATACAAGAGGCAGGTGTGCAGTCATAAAATGAAAAAGTTGGGCTGCTGAAGAATTTTGATGACAGATTCAGACACCGATGAAAAAAAGTTGAATAGAGAGGAAAAACAGAATCACTCAAATGTATGCCCAAACCACACAACTACACAGGCAGTAGGCACAGAAACAAGACACTATGAAACTCATGATTGGGCTAAAGTGAGGGGCTCATACGAGTTCTCACAAACTACTACACACTAACCAAGGGAGAAAAAAAAGCCATTTCTATATTTTTGCCGGAGAACATTTGTTTAAACGTCATCTTCGATATAGAGCATTATCTAACATGTCCTTGTGATAGGCGAAGTAGAGGGATACGCTGGCATAGTGACACATCATAAACTTGGACAAATTCATCAGGACAGTCAAGCATCTAGAACAATCTTTTTGTGGTCCGAGAAGTAATCTTTCCACTGACGGTACTTTTCTCTTCAGTGATAACATTGACATCACTAGGACAAGACATGTTGCATTTCTTCAATTTTATCAAAGGGGATACGAAGCACTTGCATGTGCTGTTATTGATATACATTGATAGGGAACATTGCAGTTCAACCATTATAAAATGTCATCATACAGTACATTAACATGGACTGAATAGCTTGGACTTAGATAGGTGTGACACTGAAGCAGCTTCATTTTCCAATGTGAAAAAAAAATCTCACTTTTTGCCATTCGCCTCACAGGTTGTCCTATCCAACAGGATTCatctcaaattgcaccctattccccatttagtgcactacttttaaccaagcTCTTGTAGTGCATTAGAaagagaacagggtgccatttgggagtcaTTTTCTGTCAATCACAAGTGCATGGTCCGGAAGATGTGTTCTACTACAGCATTTTAGCCCCGTAAGAAACGTCAAAGAGAAAGTAAAAAATGTCAGTGCTCAATCTAACTGTACAATAGAGGACAGTAGTGTATTTGTATACCTTTGATTAAGCTTATTTTAATCTAGACAGCAGGGTTAATTtgatgatatactgtacatggatAATCAGGCTAGGATGCTTCTCAGCAGATTTTCCAAActttgtctttaaaaaaaaaaaaaaacaaaaaaaaggaaaCTGTAAACACAGCACAATAAATAGATAAAACAGCAGGCTCTGCACCATGCATGTGATGAAACGTCTCTTCTGAAATGTCTCTTTCGTTTATACAACTCTCACATCTCACACTCACAAGTTTAtcgcttttttatttttattcccaAGTGCAAAACATCACAAATAAAACAAGTTTCTGTATTCAAGTAACATATAtacaaggggggaggggggggggggggagggtatTACAAATATTTAGTTACTGTACAGATACTAATTTGCCATATTCATAATTTACACAATGTCAATTTTTACTCTTATTAACAGTAACgaatacaaaaacaaaaacatttaaaaagcatGAGATGAGAATTGCAACCCATGTAATCCCCACAGTTGCCGTGGAAACGTGTCTGTCCGTACTCCGTATGTAGCCcgttgtgtgtatgtgagtggagTCCCGCCGACCACCCGCCTACCGTCCCTTTTTGCATTCCCAATGCTACGATGCACAGCACCTAAAGAGTGGATTGAGAGAGTAGCAGCAGACTCTCAGCAGAGGACTGGTTGGCCAGCAGAGGGTTGGGTAGCGTTGGGCCTGGCTGGACTGTCATGGTAGCTAGCAGCACCACCACCGCTCTGCTACGTCACCTCCATGGCCACTGTGTTGTCCGCTATACTGTTCAGAGCTGGTTTGTCTTGATCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096792 lncRNA upstream 87080 28275034 ~ 28275738 (+) True G962193
TU1096770 lncRNA upstream 107591 28254955 ~ 28255227 (+) True G962174
TU1096769 lncRNA upstream 108911 28253542 ~ 28253907 (+) True G962173
TU1096771 lncRNA upstream 109967 28252521 ~ 28252851 (+) True G962175
TU1096772 lncRNA upstream 110383 28251597 ~ 28252435 (+) True G962176
TU1096866 lncRNA downstream 883 28430065 ~ 28430895 (+) False G962255
TU1096865 lncRNA downstream 1318 28430500 ~ 28430895 (+) True G962255
TU1096920 lncRNA downstream 7252 28436434 ~ 28436800 (+) True G962299
TU1096926 lncRNA downstream 14747 28443929 ~ 28444138 (+) True G962305
TU1096928 lncRNA downstream 20037 28449219 ~ 28449630 (+) True G962307
XR_005034610.1 mRNA upstream 113332 28132122 ~ 28249486 (+) False LOC110535556
XM_021620622.2 mRNA upstream 136761 28132124 ~ 28226057 (+) False LOC110535556
XM_021620623.2 mRNA upstream 136761 28132124 ~ 28226057 (+) False LOC110535556
XM_036935286.1 mRNA upstream 136761 28132124 ~ 28226057 (+) False LOC110535556
XM_036935287.1 mRNA upstream 136761 28132124 ~ 28226057 (+) False LOC110535556
XR_002475482.2 mRNA downstream 62480 28491662 ~ 28492824 (+) False LOC110536610
LOC118937385 mRNA downstream 69928 28499110 ~ 28506016 (+) True LOC118937385
XM_021620633.2 mRNA downstream 2659682 31088864 ~ 31169983 (+) True LOC110535568
XM_021620636.2 mRNA downstream 3324687 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 3324687 31753869 ~ 31789350 (+) False LOC110535570
TU1096773 other upstream 112906 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 133417 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 148334 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 421243 27897166 ~ 27941575 (+) True G961984
TU1096389 other upstream 533641 27828746 ~ 27829177 (+) True G961864
TU1100642 other downstream 2389656 30818838 ~ 30821252 (+) True G965838
TU1103506 other downstream 4954861 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 5029179 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 5029357 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 5173865 33603047 ~ 33603674 (+) True G969455

Expression Profile