RNA id: TU1098198



Basic Information


Item Value
RNA id TU1098198
length 546
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G963484
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 29210073 ~ 29251481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGATCCATGGGATTTAACAATGACATGTTTGACCAAATTTAAACTTCCTGTCTCCCCTCATTGTctcactcagtaactttccatactCCTAGTTCATATCCACCCACCATTGACcccaactctgtgaagcatttatttgggctgcaatttctgaggtgcggttatctctaatgaacttatcctctgcagcagagataactctgggtcttcctttcctgtggcggtcctcatcagagtcagtttcatcatagcacttgatggtttttgcaactgcacttgaagaaactttcaaagttcttgaaatgttccggattgactgaccttcatgtcttaaagtaatgatggactgttgtttcgcTTTGcatatttgagatgttcttgccataatatgaacttggtcttttaccaaatagggctatcttctgtataccaaccctaccttgtcacaacacaactgattggcttaaacgcatttagaaggaaagatattccacaaattaacttttaacaagacacacctgtgaattgaaatacattccatgtgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1097952 lncRNA upstream 289568 28920209 ~ 28920505 (+) True G963248
TU1097770 lncRNA upstream 404533 28789294 ~ 28805540 (+) True G963071
TU1097760 lncRNA upstream 431432 28778252 ~ 28778641 (+) True G963061
TU1097755 lncRNA upstream 436498 28773364 ~ 28773575 (+) True G963056
TU1097743 lncRNA upstream 447440 28762415 ~ 28762633 (+) True G963044
TU1098241 lncRNA downstream 20894 29272375 ~ 29280765 (+) True G963527
TU1098275 lncRNA downstream 67679 29319160 ~ 29338476 (+) True G963560
TU1098293 lncRNA downstream 88293 29339774 ~ 29379378 (+) True G963576
TU1098354 lncRNA downstream 169600 29421081 ~ 29474194 (+) False G963633
TU1098355 lncRNA downstream 208914 29460395 ~ 29474194 (+) True G963633
LOC118937385 mRNA upstream 704057 28499110 ~ 28506016 (+) True LOC118937385
XR_002475482.2 mRNA upstream 717249 28491662 ~ 28492824 (+) False LOC110536610
XM_036935286.1 mRNA upstream 984016 28132124 ~ 28226057 (+) False LOC110535556
XM_021620633.2 mRNA downstream 1837383 31088864 ~ 31169983 (+) True LOC110535568
XM_021620636.2 mRNA downstream 2502388 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 2502388 31753869 ~ 31789350 (+) False LOC110535570
XM_036935300.1 mRNA downstream 2514619 31766100 ~ 31789350 (+) False LOC110535570
XM_021620651.2 mRNA downstream 3099201 32350682 ~ 32354712 (+) False LOC110535575
TU1096773 other upstream 960161 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 980672 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 995589 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 1268498 27897166 ~ 27941575 (+) True G961984
TU1096389 other upstream 1380896 27828746 ~ 27829177 (+) True G961864
TU1100642 other downstream 1567357 30818838 ~ 30821252 (+) True G965838
TU1103506 other downstream 4132562 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 4206880 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 4207058 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 4351566 33603047 ~ 33603674 (+) True G969455

Expression Profile