RNA id: TU1101887


Basic Information

Item Value
RNA id TU1101887
length 387
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G967029
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 31691523 ~ 31691909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTATTGTGTTTTAATGCATTGGATTTGTTGAAATGTTATACTAAATGTACATGCACAATTGTATCTTGTTGCCTTGCTGATATTCAAaagacatacagatgtaggatcttaatttgagccagtttgctacaccaggaaaataatcctgcagcaataggaaatgtgaattattatgtggattatgatTGATGGACATTTTCGTAGGGGTAGATACATTGTTCAaaatttctaagtggaaattcCGAACTTCAGAAGCATTTTAAACCTGAAATACAATACAAGTTTAACATTTCCTTGCATGCAGGAAAGTTCtcttgcaacagggtgatcaaattaagatcctatgtCTGTAGTGGAAGATTCTGAATTTGAACAGTTTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1101873 lncRNA upstream 28029 31663204 ~ 31663494 (+) True G967015
TU1101857 lncRNA upstream 50938 31640299 ~ 31640585 (+) True G966999
TU1101767 lncRNA upstream 114523 31573910 ~ 31577000 (+) False G966914
TU1101768 lncRNA upstream 114523 31573910 ~ 31577000 (+) True G966914
TU1101561 lncRNA upstream 244237 31446997 ~ 31447286 (+) True G966712
TU1101892 lncRNA downstream 5756 31697665 ~ 31697887 (+) True G967034
TU1101901 lncRNA downstream 20069 31711978 ~ 31712213 (+) True G967043
TU1101904 lncRNA downstream 24054 31715963 ~ 31716177 (+) True G967046
TU1101936 lncRNA downstream 77374 31769283 ~ 31769604 (+) True G967078
TU1101939 lncRNA downstream 80289 31772198 ~ 31772412 (+) True G967081
XM_021620633.2 mRNA upstream 521540 31088864 ~ 31169983 (+) True LOC110535568
LOC118937385 mRNA upstream 3185507 28499110 ~ 28506016 (+) True LOC118937385
XR_002475482.2 mRNA upstream 3198699 28491662 ~ 28492824 (+) False LOC110536610
XM_036935287.1 mRNA upstream 3465466 28132124 ~ 28226057 (+) False LOC110535556
XM_021620636.2 mRNA downstream 61960 31753869 ~ 31789350 (+) False LOC110535570
XM_021620637.2 mRNA downstream 61960 31753869 ~ 31789350 (+) False LOC110535570
XM_036935300.1 mRNA downstream 74191 31766100 ~ 31789350 (+) False LOC110535570
XM_021620651.2 mRNA downstream 658773 32350682 ~ 32354712 (+) False LOC110535575
XM_036935304.1 mRNA downstream 658792 32350701 ~ 32354712 (+) False LOC110535575
TU1100642 other upstream 870271 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 3441611 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 3462122 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 3477039 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 3749948 27897166 ~ 27941575 (+) True G961984
TU1103506 other downstream 1692134 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 1766452 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 1766630 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 1911138 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 1912604 33604513 ~ 33604810 (+) True G969456

Expression Profile