RNA id: TU1102860


Basic Information

Item Value
RNA id TU1102860
length 210
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G967982
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32429293 ~ 32429502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGAATAGCATTCGATAGGTGGGACAAAGGCAGAAGCCTCAGATGTTCCCCAATCCATACCGCGGGTGTAAAAGGACACATGACAGCCTTTCTCCAACCAGTTTGAAGTACATGCTGCACTAGATTCCTTTTTCCTCGTCATTTTGGGAGAGTCGGTAGCCATACTGAAAAATATGAAAAAACAACAAGGAAGGAAGAAGTAGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1102859 lncRNA upstream 18 32428896 ~ 32429275 (+) True G967981
TU1102858 lncRNA upstream 1534 32427445 ~ 32427759 (+) True G967980
TU1102854 lncRNA upstream 10328 32418749 ~ 32418965 (+) True G967976
TU1102853 lncRNA upstream 11213 32417655 ~ 32418080 (+) True G967975
TU1102824 lncRNA upstream 32916 32395356 ~ 32396377 (+) True G967947
TU1102836 lncRNA downstream 48120 32477622 ~ 32480568 (+) False G967959
TU1102837 lncRNA downstream 49351 32478853 ~ 32480568 (+) True G967959
TU1103009 lncRNA downstream 237307 32666809 ~ 32667565 (+) True G968129
TU1103010 lncRNA downstream 238164 32667666 ~ 32667918 (+) True G968130
TU1103033 lncRNA downstream 281434 32710936 ~ 32711888 (+) True G968152
XM_021620653.2 mRNA upstream 38488 32371461 ~ 32390805 (+) True LOC110535577
XM_021620651.2 mRNA upstream 74581 32350682 ~ 32354712 (+) False LOC110535575
XM_036935304.1 mRNA upstream 74581 32350701 ~ 32354712 (+) False LOC110535575
XM_021620652.2 mRNA upstream 74581 32350711 ~ 32354712 (+) True LOC110535575
XM_036935300.1 mRNA upstream 639943 31766100 ~ 31789350 (+) False LOC110535570
XM_021620655.2 mRNA downstream 32923 32462425 ~ 32476477 (+) True LOC110535578
XM_021620657.2 mRNA downstream 53642 32483144 ~ 32485710 (+) True ppp1r3g
XM_036935306.1 mRNA downstream 119987 32549489 ~ 32665562 (+) False fars2
XM_021620658.2 mRNA downstream 120194 32549696 ~ 32665562 (+) False fars2
XM_021620660.2 mRNA downstream 120194 32549696 ~ 32665562 (+) False fars2
TU1100642 other upstream 1608041 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 4179381 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 4199892 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 4214809 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 4487718 27897166 ~ 27941575 (+) True G961984
TU1103506 other downstream 954541 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 1028859 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 1029037 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 1173545 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 1175011 33604513 ~ 33604810 (+) True G969456

Expression Profile