RNA id: TU1103039


Basic Information

Item Value
RNA id TU1103039
length 356
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G968158
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32719825 ~ 32720350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatccccacccggcacagccagaagaggactaataagaataaaataccctttgtttattttacacacacttttttttattttactatgtcaatatgtctttgttGTAAATATTTGGgggtcaaactggtggcagttgtgaaaaaataCAATagttaggtttctATGCTGCCTCCTACCCCAGAGAAGTTAATTGAGGTTCAGTTTaggaacattgagaacataattctcataacactttccaagtcatgtccaataaaatgaatttaccacaggtggactccgttcaagttgtagaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1103036 lncRNA upstream 3833 32715641 ~ 32715992 (+) True G968155
TU1103033 lncRNA upstream 7937 32710936 ~ 32711888 (+) True G968152
TU1103010 lncRNA upstream 51907 32667666 ~ 32667918 (+) True G968130
TU1103009 lncRNA upstream 52260 32666809 ~ 32667565 (+) True G968129
TU1102836 lncRNA upstream 239257 32477622 ~ 32480568 (+) False G967959
TU1103150 lncRNA downstream 148844 32869194 ~ 32928077 (+) False LOC110536598
TU1103149 lncRNA downstream 206998 32927348 ~ 32928077 (+) True LOC110536598
TU1103397 lncRNA downstream 551054 33271404 ~ 33272172 (+) True G968494
TU1103463 lncRNA downstream 606337 33326687 ~ 33326975 (+) True G968545
TU1103467 lncRNA downstream 612390 33332740 ~ 33332999 (+) True G968549
XM_036935306.1 mRNA upstream 54263 32549489 ~ 32665562 (+) False fars2
XM_021620658.2 mRNA upstream 54263 32549696 ~ 32665562 (+) False fars2
XM_021620660.2 mRNA upstream 54263 32549696 ~ 32665562 (+) False fars2
XM_036935305.1 mRNA upstream 54263 32549947 ~ 32665562 (+) True fars2
XM_021620657.2 mRNA upstream 234115 32483144 ~ 32485710 (+) True ppp1r3g
XM_036935313.1 mRNA downstream 117750 32838100 ~ 32859519 (+) False LOC110535587
XM_036935312.1 mRNA downstream 118361 32838711 ~ 32859519 (+) False LOC110535587
XM_021620663.2 mRNA downstream 118362 32838712 ~ 32859519 (+) True LOC110535587
XM_036935315.1 mRNA downstream 165437 32885787 ~ 32928578 (+) False LOC110536598
XM_036935316.1 mRNA downstream 165438 32885788 ~ 32928578 (+) False LOC110536598
TU1100642 other upstream 1898573 30818838 ~ 30821252 (+) True G965838
TU1096773 other upstream 4469913 28249327 ~ 28249912 (+) True LOC110535556
TU1096685 other upstream 4490424 28227528 ~ 28229401 (+) True G962100
TU1096688 other upstream 4505341 28132621 ~ 28214484 (+) False LOC110535556
TU1096561 other upstream 4778250 27897166 ~ 27941575 (+) True G961984
TU1103506 other downstream 663693 33384043 ~ 33385527 (+) True LOC110536614
TU1103419 other downstream 738011 33458361 ~ 33473867 (+) False LOC110535592
TU1103424 other downstream 738189 33458539 ~ 33473867 (+) True LOC110535592
TU1104418 other downstream 882697 33603047 ~ 33603674 (+) True G969455
TU1104419 other downstream 884163 33604513 ~ 33604810 (+) True G969456

Expression Profile