RNA id: TU1105303



Basic Information


Item Value
RNA id TU1105303
length 239
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G970281
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34178564 ~ 34178802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggcctatgccgtcccaggcccacccatggctgcccgcctgcccagtcatgtgagatccatagattagggcctaattaattaatttaaattgactgatttccttctctgaactgtaactcagtaaaatctttgaaattattgcatgttgcgttaatatttttgttcagtttatgaTTCAATGCCAACAGTTTTATTTGATTATTAACAAACCAATATTTCAAGTTGTAACCTATTTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1104848 lncRNA upstream 21718 34156197 ~ 34156846 (+) True G969859
TU1104850 lncRNA upstream 25414 34150893 ~ 34153150 (+) True LOC110535601
TU1105044 lncRNA upstream 41667 34136684 ~ 34136897 (+) True G970041
TU1105042 lncRNA upstream 42552 34135781 ~ 34136012 (+) True G970039
TU1105026 lncRNA upstream 67066 34111241 ~ 34111498 (+) True G970023
TU1105304 lncRNA downstream 311 34179113 ~ 34179351 (+) True G970282
TU1105330 lncRNA downstream 13814 34192616 ~ 34193200 (+) True G970303
TU1105350 lncRNA downstream 48887 34227689 ~ 34228208 (+) True G970323
TU1105362 lncRNA downstream 60884 34239686 ~ 34239895 (+) True G970335
TU1105367 lncRNA downstream 67522 34246324 ~ 34246681 (+) True G970340
XM_021620694.2 mRNA upstream 834 34175502 ~ 34177730 (+) True LOC110535603
XM_036935328.1 mRNA upstream 23686 33908716 ~ 34154878 (+) False LOC110535601
XM_036935331.1 mRNA upstream 23686 33908716 ~ 34154878 (+) False LOC110535601
XM_036935329.1 mRNA upstream 23686 33993324 ~ 34154878 (+) False LOC110535601
XM_036935330.1 mRNA upstream 28171 33908716 ~ 34150393 (+) False LOC110535601
XM_036935332.1 mRNA downstream 5037 34183839 ~ 34427557 (+) False LOC110535604
XM_021620699.2 mRNA downstream 80308 34259110 ~ 34427557 (+) False LOC110535604
XM_021620700.2 mRNA downstream 80308 34259110 ~ 34427557 (+) False LOC110535604
XM_021620702.2 mRNA downstream 80308 34259110 ~ 34427557 (+) False LOC110535604
XM_021620705.2 mRNA downstream 80308 34259110 ~ 34427557 (+) False LOC110535604
TU1105066 other upstream 7577 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 383503 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 573754 33604513 ~ 33604810 (+) True G969456
TU1104418 other upstream 574890 33603047 ~ 33603674 (+) True G969455
TU1103419 other upstream 704697 33458361 ~ 33473867 (+) False LOC110535592
TU1105305 other downstream 901 34179703 ~ 34180048 (+) True G970283
TU1105524 other downstream 339024 34517826 ~ 34522340 (+) True G970489
TU1107936 other downstream 2071171 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 3363294 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 3472336 37651138 ~ 37679368 (+) True G973918

Expression Profile