RNA id: TU1105362


Basic Information

Item Value
RNA id TU1105362
length 210
lncRNA type intronic
GC content 0.40
exon number 1
gene id G970335
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34239686 ~ 34239895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgttgtaagaatgagtggaccaaagcacagcgtgagtagagttccacatatttattacaGTGAAActtcaaaacaacaaagaatTAACGAACATGCAGTATGTAGCGCATATAGGCACtaaacaaaacaatatcccacctTGCAGGTGACAAAAATGACAACCTAAGTGtaatccccaattagaggcaacgatcatcagctgcctacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1105350 lncRNA upstream 11478 34227689 ~ 34228208 (+) True G970323
TU1105330 lncRNA upstream 46486 34192616 ~ 34193200 (+) True G970303
TU1105304 lncRNA upstream 60335 34179113 ~ 34179351 (+) True G970282
TU1105303 lncRNA upstream 60884 34178564 ~ 34178802 (+) True G970281
TU1104848 lncRNA upstream 82840 34156197 ~ 34156846 (+) True G969859
TU1105367 lncRNA downstream 6429 34246324 ~ 34246681 (+) True G970340
TU1105442 lncRNA downstream 102374 34342269 ~ 34342635 (+) True G970414
TU1105517 lncRNA downstream 276562 34516457 ~ 34518178 (+) False G970489
TU1105518 lncRNA downstream 276562 34516457 ~ 34517772 (+) False G970489
TU1105519 lncRNA downstream 276562 34516457 ~ 34517772 (+) False G970489
XM_021620694.2 mRNA upstream 61956 34175502 ~ 34177730 (+) True LOC110535603
XM_036935328.1 mRNA upstream 84808 33908716 ~ 34154878 (+) False LOC110535601
XM_036935331.1 mRNA upstream 84808 33908716 ~ 34154878 (+) False LOC110535601
XM_036935329.1 mRNA upstream 84808 33993324 ~ 34154878 (+) False LOC110535601
XM_036935330.1 mRNA upstream 89293 33908716 ~ 34150393 (+) False LOC110535601
XM_021620699.2 mRNA downstream 19215 34259110 ~ 34427557 (+) False LOC110535604
XM_021620700.2 mRNA downstream 19215 34259110 ~ 34427557 (+) False LOC110535604
XM_021620702.2 mRNA downstream 19215 34259110 ~ 34427557 (+) False LOC110535604
XM_021620705.2 mRNA downstream 19215 34259110 ~ 34427557 (+) False LOC110535604
XM_021620695.2 mRNA downstream 19216 34259111 ~ 34427557 (+) False LOC110535604
TU1105305 other upstream 59638 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 68699 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 444625 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 634876 33604513 ~ 33604810 (+) True G969456
TU1104418 other upstream 636012 33603047 ~ 33603674 (+) True G969455
TU1105524 other downstream 277931 34517826 ~ 34522340 (+) True G970489
TU1107936 other downstream 2010078 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 3302201 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 3411243 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3591626 37831521 ~ 37835335 (+) True lztfl1

Expression Profile