RNA id: TU1105367


Basic Information

Item Value
RNA id TU1105367
length 358
lncRNA type intronic
GC content 0.56
exon number 1
gene id G970340
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34246324 ~ 34246681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgatgtggataggggggtgttccctctgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactccgagggccctcacctcctccctgtaggctgtctcgtcattgttggtaatcaagcctaccactgttgtgtcgtccgcaaacttgatgattgagttggaggcgtgcgtggccacgcagtcgtgggtgaacagggagtacaggagagggctcagaacgcacccttgtggggccccagtgttgaggatcagcggggaggagatgttgttgcctaccctcaccacctgggggcggcccgtcaggaagtccagtaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1105362 lncRNA upstream 6429 34239686 ~ 34239895 (+) True G970335
TU1105350 lncRNA upstream 18116 34227689 ~ 34228208 (+) True G970323
TU1105330 lncRNA upstream 53124 34192616 ~ 34193200 (+) True G970303
TU1105304 lncRNA upstream 66973 34179113 ~ 34179351 (+) True G970282
TU1105303 lncRNA upstream 67522 34178564 ~ 34178802 (+) True G970281
TU1105442 lncRNA downstream 95588 34342269 ~ 34342635 (+) True G970414
TU1105517 lncRNA downstream 269776 34516457 ~ 34518178 (+) False G970489
TU1105518 lncRNA downstream 269776 34516457 ~ 34517772 (+) False G970489
TU1105519 lncRNA downstream 269776 34516457 ~ 34517772 (+) False G970489
TU1105522 lncRNA downstream 269776 34516457 ~ 34517446 (+) False G970489
XM_021620694.2 mRNA upstream 68594 34175502 ~ 34177730 (+) True LOC110535603
XM_036935328.1 mRNA upstream 91446 33908716 ~ 34154878 (+) False LOC110535601
XM_036935331.1 mRNA upstream 91446 33908716 ~ 34154878 (+) False LOC110535601
XM_036935329.1 mRNA upstream 91446 33993324 ~ 34154878 (+) False LOC110535601
XM_036935330.1 mRNA upstream 95931 33908716 ~ 34150393 (+) False LOC110535601
XM_021620699.2 mRNA downstream 12429 34259110 ~ 34427557 (+) False LOC110535604
XM_021620700.2 mRNA downstream 12429 34259110 ~ 34427557 (+) False LOC110535604
XM_021620702.2 mRNA downstream 12429 34259110 ~ 34427557 (+) False LOC110535604
XM_021620705.2 mRNA downstream 12429 34259110 ~ 34427557 (+) False LOC110535604
XM_021620695.2 mRNA downstream 12430 34259111 ~ 34427557 (+) False LOC110535604
TU1105305 other upstream 66276 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 75337 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 451263 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 641514 33604513 ~ 33604810 (+) True G969456
TU1104418 other upstream 642650 33603047 ~ 33603674 (+) True G969455
TU1105524 other downstream 271145 34517826 ~ 34522340 (+) True G970489
TU1107936 other downstream 2003292 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 3295415 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 3404457 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3584840 37831521 ~ 37835335 (+) True lztfl1

Expression Profile