RNA id: TU1105524


Basic Information

Item Value
RNA id TU1105524
length 3053
RNA type TUCP
GC content 0.43
exon number 2
gene id G970489
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34516457 ~ 34522340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCGACCGAGCATTGCTAAGGTAGCCTCTCAGAGACTTGGGCAACTCTTGCTTAGAcggaggctgtcctaatatggacaccgtacatGTACCGTGTCATGTCATCAGTATGTTTGAGGATCTCACGAAACAAACAGTTCTGATATTAACATATGGACCCGTATCATATGATGGTCTGATCCTGTGTTGTCGTGGTATGTTGTGTACCTGTAGGGAGGCACTGGGGTTGTtgctgaggagagagaaggatcCCACTCTGGATTTATACTTGTTCTTCTTGGTCCCCGACTGGCCTAGGTGTCTCCTGGCCcgctctgtctggaggaacaacattcCCGTGGGATCATTTAGAAACTAGAAGGGGATACTCTATGttacacaggaggctggtgaagggaggagagctcataataatgactggagATGACTGGAGATGTAACGGTATCAAAAAACATGGAAACCGTGTTTGATGcggttccatttattccatcccaggcattacaatgagcccctcctatttacaatgacaccaGCCATCACTGGTGTGTTAGCACACCAAGTGCTTCACGAAAGCAACtcgggataaaaaaaaaaactccagtgCACCTTCGCATTCTTGCTTACTCCACTGTTTCTAAGGGATCGCAAAAAATGACAACACAACAGCCCCATTGGATCTTTTGagacctctccctcctgtctacatctatctcccctccctccctccttccctttctccagTCTTACCTGAACTTTGATGAGTGTGTTGGGGAAACCCTTGGCTGAGAAGGACCCAGGAAGAAGGGAGTTCCTCCCCAactgtctcttctgtctgtccAATAGCACATCCGATGGCAAGTCGTCACCTAGCCACATCTTTTAAGACATAAATGAAGCATTCATTACATTCGTAATGAACTTGGAGCAATTTTAGAGGGCTGAAAAGCATAATATGCATGCACTGCCCTTACAGGAGAAACAACTTGAATTTCACGTGATAATGGGACCgcatgtgaagttaatgtgaagttaatgtgatatcGTGACATGTAAAAGCAACACGTGACACGCGATAACACGAAACTACACGTGAAATAAACGTGACAACATGAGTTTTTCACGTCTTTATTTCACGTCAAAATGCAATTCCACATGAGAGTTTGATTTTGACATGTGAACATTTCTGCTCAACTTGTGAAATCGGCTAAATGCAATTTTTGCATGTGTCACTGCAAATTATACATGTTTTTTTATGTAAGGGCTCCCGactggcgcagcagtctaaggcactgcatctcagtgctagaggcattactacagaccctggattccgggctgtatcacaaccggccgtgatcgggagtcccatagggcggcgcataattAGTGTTTGGCCGGGATTGACCGTCATTGTAGAATaggaatttgttctaaactgacttgcctagttaaataatacaAGTAAATGTGGGTTTTAAGGTGAGTGGTACGCTGTTCAGCTAAAATAGTGTAAAAAATCTTTAATGAATGACAATATGATTACATTTGACATGATCACTTAGTACTGACTTTTCAATATGACCCCACCTGGGacttgaactcacaacctctggaGTTGGGATACGCTGAGCTCTCTGCTGTGCCAGTCTAGCATTCCTCTACATCCGCATTACCTACAATACATCTCTGCACTTAGCAAAAGAGTGCCATCTGCACTTCTATTTCAGTTATCAGTTAATCAAACCATTCTGCCATTGATTTAATTGACTTATTTCAGCTATTTAAAGGTTTTCTGAATAGTTGTCTGCTGTTTGTGCACGatattattctgttttaatgttactcctgaattACTATGATAACTATAATAGTTTTTCTTGAGTGTATTTGAAACAAAGCTGAGGTTATACCTAAGTCCAAAGTGCAGGAATACCGGTGAAATCAGTCATTGACACAGATATGGCGGCGTAGCAGGAAGATCGGAATGCCACGAAACTAGAGGTTGTGGTTCATGTATGTCAACGTGTGTTAAATATGTCAATTGCAAACCCTACGTTAAAAGcactgttttgtgtgtgtgtgtgtatcctaatTACACTTTTTTTGTTTTCATGGCATCATCTGTGAAATATCATGTGAAAAATATTCCCACGTGAAACTTCATGTGCAAAACGTGGAAATTTCACAGGTGAAATCGTGGTTTTTCCCGTAAGGGTGTGACTTCTGCAATACAGTAGTGTTGTATAACTATGGACAGTTACAGTAGACCAATTGGTTGTAGTGTATTACAGTTGTTGGTAGTCTTTATATAAATGCTTACACCAAGTGCAGAGAATGCCCCAAGTTGTCCTCGCTGTTGGGCACAAGAAAGCTATTTCATTAAAATCATTCATGCAGTTTGGGAAAAATGAAACGCCTTCCGCAAATGTACTTGTATTAAGTGCAGCCAAAGACATCTGCCTAGAGTCAGAGCATCAGACAGATGTCTTATCTATTGAATCCAcatgcatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatgaatTTGTTGAATTGATATTTAATATTAATAGTCAATATCTTAGGACAACAAGCATTTTAGTTGCATTGATCTTAGTGTTTCATTGGAATCAAATGCCTCCAGGGAGGTTATCATTACACAGCCATATGTCATGCATACGACCAACCCAGAGTGGGAAGTAATCCAGTACAAGGTGGGATCCCTCTGTGATAGAGAACAGGCTGTGGTAGGATGTCTTTGTGGGGGGAGAGGCTCATATACCTGTGGCTGTTTCTGGTTATGGGTCTTTCTTGCAGCAGATGGCTTCAGGCGCACAAGCCCTTCTTTCCTCCGGTGGTCTGCCCGCTGACACAGTTCTTTTCCTGTGATGTCCCAGTACAGTCTGCACCATGTGTGAGCTGGGGCAAGCTGCCCTGCAGGCAGAGAAAACTTAGGCACACCCAAAGAGCAACCTCCATGATGGTCCAGGCACTGGGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1105518 lncRNA upstream 54 34516457 ~ 34517772 (+) False G970489
TU1105519 lncRNA upstream 54 34516457 ~ 34517772 (+) False G970489
TU1105522 lncRNA upstream 380 34516457 ~ 34517446 (+) False G970489
TU1105442 lncRNA upstream 175191 34342269 ~ 34342635 (+) True G970414
TU1105367 lncRNA upstream 271145 34246324 ~ 34246681 (+) True G970340
TU1105533 lncRNA downstream 9746 34532086 ~ 34534246 (+) True G970497
TU1105578 lncRNA downstream 66193 34588533 ~ 34588809 (+) True G970534
TU1105580 lncRNA downstream 68333 34590673 ~ 34590879 (+) True G970536
TU1105593 lncRNA downstream 86137 34608477 ~ 34608714 (+) True G970549
TU1105596 lncRNA downstream 91217 34613557 ~ 34613761 (+) True G970552
XM_036935336.1 mRNA upstream 2489 34449722 ~ 34515337 (+) False acad11
XM_036935337.1 mRNA upstream 2489 34449723 ~ 34515337 (+) True acad11
LOC110535606 mRNA upstream 87027 34428058 ~ 34430799 (+) True LOC110535606
XM_036935332.1 mRNA upstream 90269 34183839 ~ 34427557 (+) False LOC110535604
XM_021620699.2 mRNA upstream 90269 34259110 ~ 34427557 (+) False LOC110535604
XM_036935342.1 mRNA downstream 37001 34559341 ~ 34712610 (+) False LOC110535611
XM_036935344.1 mRNA downstream 37002 34559342 ~ 34712610 (+) False LOC110535611
XM_036935343.1 mRNA downstream 37004 34559344 ~ 34712610 (+) False LOC110535611
trnar-ccg-2 mRNA downstream 207256 34729596 ~ 34729668 (+) True trnar-ccg-2
trnar-ccg-3 mRNA downstream 208717 34731057 ~ 34731129 (+) True trnar-ccg-3
TU1105305 other upstream 337778 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 346839 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 722765 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 913016 33604513 ~ 33604810 (+) True G969456
TU1104418 other upstream 914152 33603047 ~ 33603674 (+) True G969455
TU1107936 other downstream 1727633 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 3019756 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 3128798 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 3309181 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 3498109 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile