RNA id: TCONS_00039835


Basic Information

Item Value
RNA id TCONS_00039835
length 1847
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_019982
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1786230 ~ 1794873 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCCGTGATGACGTCAGCGCTGACGCGTTCattcagcgtcgagtcttcagagctgagCTCTGCCGccatcagtgaaagacaaagacagggtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagaTGTGATGGTGAAGGAGGAGAGAGAAGACctgagtgaagatgaggagaaacatcaggTCAAGAGTGAAGAAGAAACTCGCATAAAGATTGACCATAATTTTTTGATGGAAACAACAGCCGTGAAAgatttcacctgcactcagtgtggaaagagtttcagccagaAATACAATCTCAAcgttcacatgaggatccacactggagaacaaccttacaagtgttcacactgcgacatgaGATTCCATTGTGCAAGAAACCTGAAATCACATGAGATgcttcacactggagagaaaccacacAAATGCGATCACTGCAGCAAAACCTTTATAAGGGCTACAGATCTGAAGATGCATCTAAGAGTtcatacaaaggagaagccttattcatgctctgtgtgtggaaagagttttacacaGACGTCAAGTTTAAGGAAGCAtgagaagatccacactggagtgagagagtttgtgtgctttgagtgtgggaagagtttcattaAAGCTGGAGACTTGAAACGACACCAGatgattcacaccggagagaaaccgtacaagtgttcacactgcgacttGAGATTCAGGTATTTAGGACACCtaaaagcacatcaaatgaatcTCACTTCAGAAGAACAGTTGGCGTgtactcaatgtgggaagagctTCAGACAATTAACAAAACTTAATCGACACATGCTGATCCACACGGGAGAGAGACCACACAAATGCGATCAGTgctgtaaaacatttttgaaggCTTCAGGGCTGAAGAAACATCTTCGAGTTCATACTAACGAGAGGCCTTATTCATGCTCTGTGTGTGGAAATAGGTTTACGCAGGCGTCAAGTTTAAGAAAACATCAGCATATCCACACTGGCGTGAGAGAGTTCGTCTGCTCTgagtgtgagaagagttttatTACAGCTGGAGACTTGAGACGACACCAGatgattcacaccggagagaaaccgtacaagtgttcacactgcgacaagagatttcGTAGGTCTGAACGCCTGAAAGCACATGAGATAACTCACAGAGAGAAACACACAAATGCTATCAGTTTTGCACATCAATGAATTTTTTTATTCCTGAAAACTCTTGTTTGTATGTTAATGAATTCCAGTCATTTGTAAGTAGGGCACATGTAGCTTAATTACAATTAGCATATCTCCAGGCATGAATTGCAGCTGTGTAATTGTTTGTCCAGCAATGCAGTGGAATATTTATTAGTTTGGCTCAAACAACAGATCATTTGTTTGCGATGATTTGTAATCCATGATTGTTAAGTAGTatcttgcttttaaaaataacactgtaaaatataaaaaaagtaaaaggtCATTCGTTTTAAAAGGTTAGAAAAGTGTAGCAGCCAGTATTATCATTTATTAAGTATGTACAAATTGTTGCTTGTTAAGGATCTTTACACTTATCTATAAACAATACTGTTTATACGATACattggatgttttttttcattatttttttatactttcttcgagctgttatttaaaaaaaagttttagattaCATTAAGAATTTTATACACGTTTTACAGGTCTGCAAAGAAGtactacgttttttttttatttagtgtatttataaaaatgttttaagtgaCTAATTAACAGTTTTCACCTCACACattgaataaaacagatttttttttttggcc

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-28 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000169318

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041848 lncRNA upstream 54120 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00041847 lncRNA upstream 120759 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00039787 lncRNA upstream 402161 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 421369 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042012 lncRNA downstream 111129 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 158277 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 158948 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA downstream 159439 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039868 lncRNA downstream 160639 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039834 mRNA upstream 3217 1779401 ~ 1783013 (+) True XLOC_019981
TCONS_00039833 mRNA upstream 12497 1767959 ~ 1773733 (+) True XLOC_019980
TCONS_00039832 mRNA upstream 28771 1751640 ~ 1757459 (+) True XLOC_019979
TCONS_00039831 mRNA upstream 48190 1734981 ~ 1738040 (+) True XLOC_019978
TCONS_00039829 mRNA upstream 72921 1708760 ~ 1713309 (+) True XLOC_019976
TCONS_00039837 mRNA downstream 1184 1796057 ~ 1800444 (+) True XLOC_019983
TCONS_00039838 mRNA downstream 11362 1806235 ~ 1809533 (+) True XLOC_019984
TCONS_00039839 mRNA downstream 20535 1815408 ~ 1818563 (+) True XLOC_019985
TCONS_00039840 mRNA downstream 26845 1821718 ~ 1825814 (+) True XLOC_019986
TCONS_00039841 mRNA downstream 41909 1836782 ~ 1838576 (+) False XLOC_019987
TCONS_00039830 other upstream 58740 1725568 ~ 1727490 (+) False XLOC_019977
TCONS_00039823 other upstream 120759 1661266 ~ 1665471 (+) True XLOC_019971
TCONS_00039822 other upstream 124884 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039821 other upstream 132292 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039818 other upstream 152781 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039846 other downstream 83274 1878147 ~ 1879980 (+) False XLOC_019991
TCONS_00039847 other downstream 83276 1878149 ~ 1880670 (+) True XLOC_019991
TCONS_00039856 other downstream 135728 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039858 other downstream 151803 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039861 other downstream 158265 1953138 ~ 1953936 (+) False XLOC_019999

Expression Profile

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