RNA id: TU1107204



Basic Information


Item Value
RNA id TU1107204
length 241
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G972025
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35633515 ~ 35633755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagaaagtccatattgcaaatgtacggtcccttacccgacgtccgaaatcgtttgtaaaattcgcggtcggcgtcgggccgtgcggtagggccggacctaccgggaagtcgtcgaatgaactttgtcggactttcggttcccgttttaaaaaaaaaacaagtttcggaccgtttttccgccgtcccggacactcccaccagatggcatacggaatcatatggcaatttggcaaaacatcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1107203 lncRNA upstream 1936 35631200 ~ 35631579 (+) True G972024
TU1107033 lncRNA upstream 48026 35585288 ~ 35585489 (+) True G971872
TU1106958 lncRNA upstream 179810 35431920 ~ 35453705 (+) True G971805
TU1106900 lncRNA upstream 265861 35362390 ~ 35367654 (+) True G971748
TU1106898 lncRNA upstream 273218 35360096 ~ 35360297 (+) True G971746
TU1107205 lncRNA downstream 1160 35634915 ~ 35635551 (+) True G972026
TU1107218 lncRNA downstream 22655 35656410 ~ 35656619 (+) True G972039
TU1107247 lncRNA downstream 41657 35675412 ~ 35675659 (+) True G972068
TU1107253 lncRNA downstream 43883 35677638 ~ 35677863 (+) True G972074
TU1107255 lncRNA downstream 46120 35679875 ~ 35680109 (+) True G972076
XM_036934607.1 mRNA upstream 31907 35595222 ~ 35601608 (+) False adcyap1
LOC110535011 mRNA downstream 86334 35720089 ~ 35866083 (+) True LOC110535011
XM_021620734.2 mRNA downstream 234510 35868265 ~ 35893791 (+) False LOC110535623
XM_021620733.2 mRNA downstream 234511 35868266 ~ 35893791 (+) False LOC110535623
XR_002475284.2 mRNA downstream 309959 35943714 ~ 35950398 (+) False LOC110535625
XR_005034620.1 mRNA downstream 309959 35943714 ~ 35950398 (+) True LOC110535625
TU1105524 other upstream 1111175 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1453467 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1462528 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 1838454 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 2028705 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 616218 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1908341 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 2017383 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 2197766 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 2386694 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile