RNA id: TU1107305



Basic Information


Item Value
RNA id TU1107305
length 208
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G972126
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35713557 ~ 35713764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCAAAACCTGGCTGCGCCAACCACCCCGTGTGCCTCCTCCCAATTATTTTTTTTtgaggctgcctctcgggcttctgtCGTGGCCGCAAACCCTGGTTTCGTCGTTGTTGTTCTCTCGCTGTCTCCGTCTGCTTCCATGGAAGGCAATCCTTACtggccaggatctcctcccacttCCAGGATCCCTTACCGTCCAATatatcctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1107255 lncRNA upstream 33448 35679875 ~ 35680109 (+) True G972076
TU1107253 lncRNA upstream 35694 35677638 ~ 35677863 (+) True G972074
TU1107247 lncRNA upstream 37898 35675412 ~ 35675659 (+) True G972068
TU1107218 lncRNA upstream 56938 35656410 ~ 35656619 (+) True G972039
TU1107205 lncRNA upstream 78006 35634915 ~ 35635551 (+) True G972026
TU1107316 lncRNA downstream 5418 35719182 ~ 35719500 (+) True G972137
TU1107334 lncRNA downstream 18157 35731921 ~ 35732134 (+) True G972154
TU1107338 lncRNA downstream 20545 35734309 ~ 35734539 (+) True G972158
TU1107372 lncRNA downstream 48497 35762261 ~ 35762507 (+) True G972192
TU1107434 lncRNA downstream 140637 35854401 ~ 35854706 (+) True G972252
XM_036934607.1 mRNA upstream 111949 35595222 ~ 35601608 (+) False adcyap1
LOC110535011 mRNA downstream 6325 35720089 ~ 35866083 (+) True LOC110535011
XM_021620734.2 mRNA downstream 154501 35868265 ~ 35893791 (+) False LOC110535623
XM_021620733.2 mRNA downstream 154502 35868266 ~ 35893791 (+) False LOC110535623
XR_002475284.2 mRNA downstream 229950 35943714 ~ 35950398 (+) False LOC110535625
XR_005034620.1 mRNA downstream 229950 35943714 ~ 35950398 (+) True LOC110535625
TU1105524 other upstream 1191217 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1533509 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1542570 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 1918496 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 2108747 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 536209 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1828332 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1937374 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 2117757 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 2306685 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile