RNA id: TCONS_00039841



Basic Information


Item Value
RNA id TCONS_00039841
length 839
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_019987
representative False

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1836782 ~ 1838576 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


tcagcgtcgagtcttcagagctgagctctgccgccaccagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAggtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGTAAAGAagaaactcagtcagagactgAAGATAGTCTTTCAGTGGAAAGAACAGCTGTGAAAGGTTTGACCcgcactcagtgtggaaaaagtttcaGCCAACAGACTCTCAAGCTTGACATGATGAGCCCCACTGGAGAGAGATCTTACTCATGTGatcaatgcagcaaaacatttttgtgGCCTTCAGATCTAAAGAAACATCTCAGAGATCATACAACAGAAAAGCCTTATTCATGTTccgagtgtggaaagagtttcagactGGCTAGTTTCCTTAAATATCACAAAATGACTCACACTGGGGAAAAACcgttcacatgtactcagtgtgggaagagtttcacacaatcatcaaaccttaatgaacacatgaagatccacactggagagaaaacacacagatGTGATCAATGCAGCAAGACATTTTTGAGGACTTCACAGCTGAACAGACATCTTAGAGTTCATGCAAACGAGAGGCCGTATTCATGttctgagtgtgggaagagttttacacAGAAGTCACATTTAAATGgccatcagaagatccacactggtgtgagagagtttgcctgctctgactgtgggaagagttttatgaAAGCTGCAGGCTTGAGACGACACCAGATTattcacactgga

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168954

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00041848 lncRNA upstream 104672 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00041847 lncRNA upstream 171311 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00039787 lncRNA upstream 452713 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 471921 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042012 lncRNA downstream 67426 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 114574 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 115245 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA downstream 115736 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039868 lncRNA downstream 116936 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039840 mRNA upstream 10968 1821718 ~ 1825814 (+) True XLOC_019986
TCONS_00039839 mRNA upstream 18219 1815408 ~ 1818563 (+) True XLOC_019985
TCONS_00039838 mRNA upstream 27249 1806235 ~ 1809533 (+) True XLOC_019984
TCONS_00039837 mRNA upstream 36338 1796057 ~ 1800444 (+) True XLOC_019983
TCONS_00039835 mRNA upstream 41909 1786230 ~ 1794873 (+) False XLOC_019982
TCONS_00039843 mRNA downstream 7571 1846147 ~ 1849410 (+) True XLOC_019988
TCONS_00039844 mRNA downstream 15423 1853999 ~ 1861899 (+) True XLOC_019989
TCONS_00039845 mRNA downstream 30407 1868983 ~ 1891553 (+) False XLOC_019990
TCONS_00039848 mRNA downstream 44366 1882942 ~ 1897752 (+) False XLOC_019990
TCONS_00039849 mRNA downstream 49174 1887750 ~ 1894577 (+) True XLOC_019990
TCONS_00039830 other upstream 109292 1725568 ~ 1727490 (+) False XLOC_019977
TCONS_00039823 other upstream 171311 1661266 ~ 1665471 (+) True XLOC_019971
TCONS_00039822 other upstream 175436 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039821 other upstream 182844 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039818 other upstream 203333 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039846 other downstream 39571 1878147 ~ 1879980 (+) False XLOC_019991
TCONS_00039847 other downstream 39573 1878149 ~ 1880670 (+) True XLOC_019991
TCONS_00039856 other downstream 92025 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039858 other downstream 108100 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039861 other downstream 114562 1953138 ~ 1953936 (+) False XLOC_019999

Expression Profile


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