RNA id: TU1107434



Basic Information


Item Value
RNA id TU1107434
length 209
lncRNA type intronic
GC content 0.48
exon number 2
gene id G972252
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35854401 ~ 35854706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCAAGTCTATTGGGTGGTCTATCTTTTTTTCAGGTGAAGTCATCTGTTACTTCACAACCAATAGACAAAGATGGAAAAGCCTGTTTCGTAGTGGACCATGTGAGAGGGCCCAAGGTGGAGTATGCGCTGGAGTTCAGAGGGTCCTTCAACAAGCAGCCCATCCACGGTCCATCTGTGAAGCTCACCATTATCCCAGATCCCAACCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1107372 lncRNA upstream 91894 35762261 ~ 35762507 (+) True G972192
TU1107338 lncRNA upstream 119862 35734309 ~ 35734539 (+) True G972158
TU1107334 lncRNA upstream 122267 35731921 ~ 35732134 (+) True G972154
TU1107316 lncRNA upstream 134901 35719182 ~ 35719500 (+) True G972137
TU1107305 lncRNA upstream 140637 35713557 ~ 35713764 (+) True G972126
TU1107451 lncRNA downstream 20770 35875476 ~ 35875676 (+) True G972266
TU1107456 lncRNA downstream 26377 35881083 ~ 35881349 (+) True G972271
TU1107448 lncRNA downstream 38452 35893158 ~ 35893759 (+) True LOC110535623
TU1107619 lncRNA downstream 118325 35973031 ~ 35973610 (+) True G972427
TU1107652 lncRNA downstream 163523 36018229 ~ 36018554 (+) True G972454
XM_036934607.1 mRNA upstream 252793 35595222 ~ 35601608 (+) False adcyap1
XM_021620734.2 mRNA downstream 13559 35868265 ~ 35893791 (+) False LOC110535623
XM_021620733.2 mRNA downstream 13560 35868266 ~ 35893791 (+) False LOC110535623
XR_002475284.2 mRNA downstream 89008 35943714 ~ 35950398 (+) False LOC110535625
XR_005034620.1 mRNA downstream 89008 35943714 ~ 35950398 (+) True LOC110535625
NM_001160663.2 mRNA downstream 151379 36006085 ~ 36011517 (+) True mlrn
TU1105524 other upstream 1332061 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 1674353 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 1683414 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2059340 33794375 ~ 33795061 (+) True G969752
TU1104419 other upstream 2249591 33604513 ~ 33604810 (+) True G969456
TU1107936 other downstream 395267 36249973 ~ 36250586 (+) True G972725
TU1109131 other downstream 1687390 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1796432 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1976815 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 2165743 38020449 ~ 38038711 (+) False LOC110535015

Expression Profile