RNA id: TCONS_00039845


Basic Information

Item Value
RNA id TCONS_00039845
length 791
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_019990
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1868983 ~ 1897752 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attcagcgtcgagtcttcagagctgagGTTTTCGTCAGAGCATGCAGTGACTAACTTTAAGTTGAGGAATAACGTTACATTTGTGAGAACCAGTTTGAGCTGGCACCTGAAAGGTAGCTGGAATTGTGGAGACAAGAAGAGCTAACAGAAAATGGATGAAGTAATGATGAAAGATTTGGTGTTGTCATTCTTACCGGGCCTCTCCGTTGAAACTCTGACTTCACTACTGAGTTTCTTGCAAGAAATTGGCGTGGAAAGCAAGGAAGATCTTGCTTTGGTACAAGAAAAAGATCTAGAGAAATACCTTCGACCTATTCAGTGTCGGAAGTTACTAAATGGCTTTCAaggatTTGCAGTAGTTCAACTGGAAATGATTCCTGTGCCCTCTACATCTTTTGACCCTACTTTCCTTAAAGCTCCTCCCACTGTACCTCCCAGCATAGTTTCACCTCCCTCCTTGCAGATTGGCAGACCATGGCATGCAGAATTTCAAGTGAATTGGGATAGGATGCCAGCCGCAATTCGCAAAGCAATTGCAGAAAAAGCAAGACCAATTCCTGGCGAAAGAAAAGATATGGTGAAGGCAGTGGTGGATCAAATATTAGATCATGATCCTAACCCAACAAGAGCAATGTGTCACAACATTGCTCGAAGCATTATAAGGACCCATCCAGAGTGCTTTGCTGATATGTCAAAAAATGGAGACATCATTGGTGATGGCTGTTATTCTCTTCTGCAGCAAATTAAAACTAGAGTTGAATATAAGAACAGGAGCAACACCCTGGTGAGAC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-9 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000160135

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00041848 lncRNA upstream 136873 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00041847 lncRNA upstream 203512 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00039787 lncRNA upstream 484914 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042010 lncRNA upstream 504122 1316752 ~ 1364861 (+) True XLOC_019944
TCONS_00042012 lncRNA downstream 14449 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00039862 lncRNA downstream 61597 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 62268 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA downstream 62759 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039868 lncRNA downstream 63959 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039844 mRNA upstream 7084 1853999 ~ 1861899 (+) True XLOC_019989
TCONS_00039843 mRNA upstream 19573 1846147 ~ 1849410 (+) True XLOC_019988
TCONS_00039841 mRNA upstream 30407 1836782 ~ 1838576 (+) False XLOC_019987
TCONS_00039842 mRNA upstream 30425 1837448 ~ 1838558 (+) True XLOC_019987
TCONS_00039840 mRNA upstream 43169 1821718 ~ 1825814 (+) True XLOC_019986
TCONS_00039850 mRNA downstream 7589 1899142 ~ 1901705 (+) True XLOC_019992
TCONS_00039851 mRNA downstream 12993 1904546 ~ 1906058 (+) False XLOC_019993
TCONS_00039852 mRNA downstream 19716 1911269 ~ 1919599 (+) False XLOC_019994
TCONS_00039853 mRNA downstream 19782 1911335 ~ 1919596 (+) True XLOC_019994
TCONS_00039854 mRNA downstream 30740 1922293 ~ 1925346 (+) True XLOC_019995
TCONS_00039830 other upstream 141493 1725568 ~ 1727490 (+) False XLOC_019977
TCONS_00039823 other upstream 203512 1661266 ~ 1665471 (+) True XLOC_019971
TCONS_00039822 other upstream 207637 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039821 other upstream 215045 1650128 ~ 1653938 (+) True XLOC_019970
TCONS_00039818 other upstream 235534 1630686 ~ 1633449 (+) False XLOC_019968
TCONS_00039856 other downstream 39048 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039858 other downstream 55123 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039861 other downstream 61585 1953138 ~ 1953936 (+) False XLOC_019999
TCONS_00039865 other downstream 62791 1954344 ~ 1960158 (+) False XLOC_019999
TCONS_00039866 other downstream 63943 1955496 ~ 1960320 (+) False XLOC_019999

Expression Profile

//