RNA id: TU1107960


Basic Information

Item Value
RNA id TU1107960
length 1493
lncRNA type antisense_over
GC content 0.46
exon number 11
gene id G972744
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36292387 ~ 36295696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacagatttttcactatGTCGggtcagggattcgatctagtgACCTTTCGGatactggccaaacgctctaaccgctaggctacctgcaggttGTAGTCTTGGAGGATCTTGACCAGTGAGTCTCTGAGGTTAGGAATCTCCATGCCCTCCTTTATGCGGTGGATGAGTAAAATGGGATCCACATGTGTCCCAATGTTATTGAGGAGACCAGTAATGAAGgGTGGCTTATCGATGGAATACGAGATGAGATCCTCCCACAGCTCAGCGTCATCCTGCTCCTTGGCGAACTCTATGGCCTTGTCCACATCCTCCAGTTCCTCCATGATCATCTGAAGAGCCCGTCTACAGTTCCCCATTCTGCTGAGCAGGAAGACAGTTTCCTCCACAAAGTTTCTCTCCTGACAAATTTCCAGAGCCTTTTCTAGTGGGCAGTGGATGCTGTCTCTCAGGAATGGCAGTAGGTTGGGCCGATCGTATTCAGCATACAGGCCAATTTGTCTCTCATGGTACCGCTGACCCTTGTGGTGGTCCCTCTTGAATAGTTTGTGGAGATAAATGTGTAGCAGCTCAGGCCTGTCCCTGAGTTCCTCCACCACTCTGTCAATCAATATTTTGTCTTCGTTATCCAGGAGCATGTCGACAGCTTTCTCTTTATCAAAGTCCATGAGGAGCACAATCTTGTCTTCTATGGAGGAGAAGAGGTCGTGTTTGTGGATCAGCTGGTAAACATCTTTATGCCTCAGTCTCAGGTAGATCTCCAGGGCTCGGTCATACCGCTGGTCATATGTATACAGTTCAGCCAGTGTGGTGAGCAGGGTGCTGTTCATGGGGTCCTTCTTGAGGTGGTCGGTGACTGCCTGAACAATGGTCATGTTATTGTAGAGCTCTCCTGGCCACTCACGGATCAAGGTGGCAAAGCCctCATAGTCTGACTTTAGAAACTCGTGTAAGATCATCTCATAGATGGCAGGTCTGAGACGCAGGTCCCCTCTAGGCAAGTACTGACTGATGGCCTTCAACTGCCCAATGGTTTTAAACCTGTACACCTCATTCTCCCAGAGTTCCATGTTTTTTCCCAGCACCTTCTGACACTTCCTGGCAGCGGTGTCATAGTCACCTTTCTCCACCAGGTGATTGATGTAGGCCATCCCAATTTTCTGATTACAAAAGAAAAGACACTCCATGAGGGAACACAACATGAGTAATGGACTGTATCTGTAATTTCATCAAATGTTGTTTCCAAAAATCTACTTCATTCTTTTCCTTGACCTCAACAGATCTGTAAGTCATTATTAATGTCAAGAAATCCTGTAAAATCACAGCCCCATCTAACTTaaagtgaagaaagtagaggtcTTAGATCTTCGTTAGAAAATTAGACAACTAAGGGATCGCAATGTGTCAAGGCTTGAAGACATGCAGTGGACTACAAAAGTATTGGGAAAGTGACTATTTTTTCCCCCCAGcagtttggatttgaaatgaaaatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1107957 lncRNA upstream 879 36290910 ~ 36291508 (+) True G972741
TU1107938 lncRNA upstream 39603 36252580 ~ 36252784 (+) True G972727
TU1107908 lncRNA upstream 96238 36195843 ~ 36196149 (+) True G972699
TU1107907 lncRNA upstream 97325 36194781 ~ 36195062 (+) True G972698
TU1107896 lncRNA upstream 110098 36182075 ~ 36182289 (+) True G972687
TU1107958 lncRNA downstream 6401 36302097 ~ 36302909 (+) True G972742
TU1108698 lncRNA downstream 537099 36832795 ~ 36833926 (+) True G973455
TU1108871 lncRNA downstream 789146 37084842 ~ 37086656 (+) True G973611
TU1108922 lncRNA downstream 835209 37130905 ~ 37134701 (+) True G973659
TU1108985 lncRNA downstream 935989 37231685 ~ 37231898 (+) True G973716
XM_021620745.2 mRNA upstream 26313 36255223 ~ 36266074 (+) True LOC110535634
XM_021620744.2 mRNA upstream 58993 36231115 ~ 36233394 (+) True sox17
XM_021619900.2 mRNA upstream 101314 36189424 ~ 36191073 (+) True LOC110535014
XM_021620743.2 mRNA upstream 113289 36164789 ~ 36179098 (+) True LOC110535631
XM_036935363.1 mRNA upstream 134743 36151080 ~ 36157644 (+) True LOC110535630
XM_036935370.1 mRNA downstream 49030 36344726 ~ 36461901 (+) False LOC110535637
XM_021620750.2 mRNA downstream 49031 36344727 ~ 36461901 (+) True LOC110535637
XM_021620751.2 mRNA downstream 179806 36475502 ~ 36489512 (+) True LOC110535639
NM_001124699.2 mRNA downstream 237237 36532933 ~ 36535742 (+) True c-myc
XR_002475488.2 mRNA downstream 249702 36545398 ~ 36584763 (+) True LOC110536619
TU1107936 other upstream 41801 36249973 ~ 36250586 (+) True G972725
TU1105524 other upstream 1770047 34517826 ~ 34522340 (+) True G970489
TU1105305 other upstream 2112339 34179703 ~ 34180048 (+) True G970283
TU1105066 other upstream 2121400 34163816 ~ 34170987 (+) True G970054
TU1104738 other upstream 2497326 33794375 ~ 33795061 (+) True G969752
TU1109131 other downstream 1246400 37542096 ~ 37543202 (+) True LOC110535658
TU1109202 other downstream 1355442 37651138 ~ 37679368 (+) True G973918
TU1109337 other downstream 1535825 37831521 ~ 37835335 (+) True lztfl1
TU1109354 other downstream 1724753 38020449 ~ 38038711 (+) False LOC110535015
TU1109353 other downstream 1747010 38042706 ~ 38043330 (+) False LOC110535015

Expression Profile