RNA id: TU1110814


Basic Information

Item Value
RNA id TU1110814
length 231
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G975372
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38502760 ~ 38547774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaaggagtggctttgtaagaagcatttcaaggtcctggagtggcctagccggtctccagatctcaaccccatagataatttttggagggagttgaaagttcgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1110771 lncRNA upstream 77126 38425402 ~ 38425634 (+) True G975330
TU1110760 lncRNA upstream 94571 38407679 ~ 38408189 (+) True G975319
TU1110759 lncRNA upstream 95367 38407180 ~ 38407393 (+) True G975318
TU1110734 lncRNA upstream 112977 38389404 ~ 38389783 (+) True G975293
TU1110722 lncRNA upstream 121279 38381270 ~ 38381481 (+) True G975281
TU1110857 lncRNA downstream 27952 38575726 ~ 38580510 (+) True G975412
TU1111056 lncRNA downstream 98545 38646319 ~ 38646749 (+) True G975600
TU1111067 lncRNA downstream 137908 38685682 ~ 38694642 (+) False G975605
TU1111070 lncRNA downstream 137908 38685682 ~ 38687528 (+) False G975605
TU1111099 lncRNA downstream 137908 38685682 ~ 38696041 (+) False G975605
XM_021620823.2 mRNA upstream 5649 38351571 ~ 38497111 (+) False LOC110535674
XM_036935435.1 mRNA upstream 5649 38351571 ~ 38497111 (+) True LOC110535674
XM_036935434.1 mRNA upstream 285502 38199126 ~ 38217258 (+) False LOC110535669
XM_021620821.2 mRNA downstream 78487 38626261 ~ 38631703 (+) False LOC110535673
XM_021620820.2 mRNA downstream 78703 38626477 ~ 38631703 (+) True LOC110535673
XR_005034790.1 mRNA downstream 285388 38833162 ~ 38834976 (+) True LOC118937440
XR_005034791.1 mRNA downstream 290393 38838167 ~ 38840060 (+) True LOC118937441
XM_021620839.2 mRNA downstream 403518 38951292 ~ 38954226 (+) False LOC110535679
TU1109485 other upstream 439660 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 459430 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 464049 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 667425 37831521 ~ 37835335 (+) True lztfl1
TU1109202 other upstream 823392 37651138 ~ 37679368 (+) True G973918
TU1111560 other downstream 509902 39057676 ~ 39058011 (+) True G976017
TU1113929 other downstream 2220062 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 2455302 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 3530718 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 3980746 42528520 ~ 42533308 (+) True G979965

Expression Profile