RNA id: TU1111070


Basic Information

Item Value
RNA id TU1111070
length 1438
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G975605
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38685682 ~ 38726531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccctaaaagtgttttgaaacacataacctgtcattatgaaaatcactgtattcaaacctgtgtagatcagtcaattcttaacttaaagactttaaactcaggattctgtaagagaataccccaagcaagatatgtgtttacgtatagcttcctgtgccaaccggaagtgcctttaattgggtcacactgtctgttttgaagggttaaaaaagtcacatctttccaaaacttcatatgtgtgactaggtaaccctcctaaactgtaaatcagtcatttctcccagcagatgtcaaagaaaagctctcacacacacagcaaggatggagtgaaaaagtgcggtgctgaaaaagtaggcccaaaatgaagcctagccctaaatgtcatttgttttgggtgacagtgagagaactgctagggtgagaagcacaattcaacctcaggtacgttcctgaggtcctcccgatccgtgcaagcctaaccttgaccgtgtggcattaacccttagcagttaaaagaaggtgtttacttcaaacagtttgcattgacttctctccccataggaatacattgcctgcacctctaaattcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttctatgacagtccatcagaccactatgaggtctacctgtgtcgaatctaagcttcctggagcaaccggaagtggttaaattcacccaaaaggtattttgatgtacataacctgcaaatgtgaaaatgactgcattcaaccctgtgtagatcagtcaatttttaacataaagactttaaactcaggattctgtaagagaataccccaagcaagatatgagtttcctgtgccaaccggaagtgcctttaattgggtcacactgtctatTTTGAAGGGTTaaagcaatagaaataaccacttttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaagcataactgttcaaactagatgattagggacattattatggacaattttcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaatcatgtttggttgcactacggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1111056 lncRNA upstream 38933 38646319 ~ 38646749 (+) True G975600
TU1110857 lncRNA upstream 105172 38575726 ~ 38580510 (+) True G975412
TU1110814 lncRNA upstream 137908 38502760 ~ 38547774 (+) True G975372
TU1110771 lncRNA upstream 260048 38425402 ~ 38425634 (+) True G975330
TU1110760 lncRNA upstream 277493 38407679 ~ 38408189 (+) True G975319
TU1111105 lncRNA downstream 15403 38702931 ~ 38709798 (+) False G975605
TU1111094 lncRNA downstream 31856 38719384 ~ 38720174 (+) False G975605
TU1111103 lncRNA downstream 32925 38720453 ~ 38726531 (+) False G975605
TU1111077 lncRNA downstream 34687 38722215 ~ 38724148 (+) True G975605
TU1111148 lncRNA downstream 54204 38741732 ~ 38742160 (+) True G975631
XM_021620821.2 mRNA upstream 53979 38626261 ~ 38631703 (+) False LOC110535673
XM_021620820.2 mRNA upstream 53979 38626477 ~ 38631703 (+) True LOC110535673
XM_021620823.2 mRNA upstream 188571 38351571 ~ 38497111 (+) False LOC110535674
XM_036935435.1 mRNA upstream 188571 38351571 ~ 38497111 (+) True LOC110535674
XM_021620817.2 mRNA upstream 468424 38209560 ~ 38217258 (+) True LOC110535669
XR_005034790.1 mRNA downstream 145634 38833162 ~ 38834976 (+) True LOC118937440
XR_005034791.1 mRNA downstream 150639 38838167 ~ 38840060 (+) True LOC118937441
XM_021620839.2 mRNA downstream 263764 38951292 ~ 38954226 (+) False LOC110535679
XM_021620837.2 mRNA downstream 263764 38951292 ~ 38954353 (+) True LOC110535679
XM_021620840.2 mRNA downstream 302326 38989854 ~ 39004586 (+) True LOC110535680
TU1109485 other upstream 622582 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 642352 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 646971 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 850347 37831521 ~ 37835335 (+) True lztfl1
TU1109202 other upstream 1006314 37651138 ~ 37679368 (+) True G973918
TU1111560 other downstream 370148 39057676 ~ 39058011 (+) True G976017
TU1113929 other downstream 2080308 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 2315548 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 3390964 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 3840992 42528520 ~ 42533308 (+) True G979965

Expression Profile