RNA id: TU1111103


Basic Information

Item Value
RNA id TU1111103
length 1617
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G975605
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 38685682 ~ 38726531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcaaactagatgattagggacattattatggacaattttcaggaaattgcagcaattgaactacagaaataaccacttctctataaacaaggtctaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggatattattatggacagttttcagcaaattgcagcaattgaacaacataaataaccaattttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacagttttcagcaaattgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgacctacagaaataaccacttttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggactttattatggacagttttcagcaaattgcagcaattgaactacataaataaccacttttccataaacaaggtcaaaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgacctacagaaataaccacttttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgaactacagaaataaccacttctccataaacaaggtctaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgaactacagaaataaccacttttcctaaaacaaggtctaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatgtaCAATTAGCAgtaaattgcagcaattgaactacagaaataaccacttttccataaacaaggtctaaaatcatgtttggttgcactccggatacaatgttttaaacataactgttcaaactagatgattagggacattattatggacaattttcagcaaattgcagcaattgaactaatTGTAAAACGTCCACATACTGTAATATACATCCACAATACTTTTAGTTTTGGATGTTATGATGATATTCCCTGGAGGTCGGGGCCCACAGGGCAGGTGCCCTGCGTGCCCATTCGGTAATCTGGCCCTTATCATCAAGTTAAACCACAGGTATTGTTGTTACACATCCTCACACTGTCTTGGAGGATAAAACTGAGACTGTAGACAGCTTCCATTTTACCTAAATTTATCGTCCAAAGAATGTTCTCATAGTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1111094 lncRNA upstream 279 38719384 ~ 38720174 (+) False G975605
TU1111105 lncRNA upstream 10655 38702931 ~ 38709798 (+) False G975605
TU1111099 lncRNA upstream 24412 38685682 ~ 38696041 (+) False G975605
TU1111067 lncRNA upstream 25811 38685682 ~ 38694642 (+) False G975605
TU1111070 lncRNA upstream 32925 38685682 ~ 38687528 (+) False G975605
TU1111148 lncRNA downstream 15201 38741732 ~ 38742160 (+) True G975631
TU1111150 lncRNA downstream 16260 38742791 ~ 38758067 (+) True G975632
TU1111225 lncRNA downstream 108701 38835232 ~ 38849440 (+) False G975701
TU1111224 lncRNA downstream 119304 38845835 ~ 38913447 (+) True G975701
TU1111247 lncRNA downstream 149326 38875857 ~ 38877069 (+) True G975723
XM_021620821.2 mRNA upstream 88750 38626261 ~ 38631703 (+) False LOC110535673
XM_021620820.2 mRNA upstream 88750 38626477 ~ 38631703 (+) True LOC110535673
XM_021620823.2 mRNA upstream 223342 38351571 ~ 38497111 (+) False LOC110535674
XM_036935435.1 mRNA upstream 223342 38351571 ~ 38497111 (+) True LOC110535674
XM_021620817.2 mRNA upstream 503195 38209560 ~ 38217258 (+) True LOC110535669
XR_005034790.1 mRNA downstream 106631 38833162 ~ 38834976 (+) True LOC118937440
XR_005034791.1 mRNA downstream 111636 38838167 ~ 38840060 (+) True LOC118937441
XM_021620839.2 mRNA downstream 224761 38951292 ~ 38954226 (+) False LOC110535679
XM_021620837.2 mRNA downstream 224761 38951292 ~ 38954353 (+) True LOC110535679
XM_021620840.2 mRNA downstream 263323 38989854 ~ 39004586 (+) True LOC110535680
TU1109485 other upstream 657353 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 677123 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 681742 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 885118 37831521 ~ 37835335 (+) True lztfl1
TU1109202 other upstream 1041085 37651138 ~ 37679368 (+) True G973918
TU1111560 other downstream 331145 39057676 ~ 39058011 (+) True G976017
TU1113929 other downstream 2041305 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 2276545 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 3351961 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 3801989 42528520 ~ 42533308 (+) True G979965

Expression Profile