RNA id: TCONS_00039854


Basic Information

Item Value
RNA id TCONS_00039854
length 1228
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_019995
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1922293 ~ 1925346 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtTGCTCCCGCCTGCCGTGATGACGTCAGCAGCTGCTTGACGCGTTCATccagcgtcgagtcttcagagctgagCTCTGCTGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATtgtgaaggaggagagtgaagaactgagtgaagacgaggagaaacatcatgtcaagaGTGAAGAAGATACTCACACAAACACTGAAGATAGTTTTTCAGTGGAAAGAGCAGCTGTGAACTGTTTGACCTGCacccagtgtggaaagagtttcagccaccAATGCTATCTCGAGcgtcacatgatgatccacactggagagaaaccttacaagtgttcacaatGCGACATGAGATTTGATTATTTAGTAAAGCTGAAAacacacatgatgatccacactggagaggaACCTCACAGATGTTCACACTGCCACAGGATATTTATTCATCCAGGAAACCTGAAAacacacatgagaatccacactggagagagaccttacaagtgttcacactgcgacatgaGATTCAATAATTTAGGAAACCTGAAAACACACatgctgatccacactggagagaaaacacaccaATGTGAGcagtgcagcaaaacatttttgagggcTTCAGAGCTGAAGAACCATCTTAGAGTTCATACAAGTGAGAGGCCTTATTCCTGCTCTGAGTGCGGAAAGACTGTTATTACAGCTAGAGCCTTGAAAATGCAccagatgattcacactggagaaaaaccattaaCATGTACTCAGTGCGGGAAAGGTTTCACACAAATgtcacaccttaatgaacacatgctGGTTCACACTGGAGTGAAAACTCACAGATGTGATcagtgcagcaaaacatttttgagggcTTCAGAGCTGAAGAGACATCTTAGCGTTCATTCAAACGAGAGGCCGTATTCATGctctgagtgtgggaagagttttagacatccgacacatttaaaataccatcagaagatccacactggtgtgaaagagtttGTGTGctctgagtgtgggaagagtttttttAAAGCTGCGGACTTGAGACGACACCAGAGGAGTCACACTGGAGatttcaagtgttcacactgcgacaaaacATTCAGACGTTCAGGacacctgaaaacacatgagaggactcacactggagaaagAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-386 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000165758

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042012 lncRNA upstream 12869 1906002 ~ 1909424 (+) True XLOC_019993
TCONS_00041848 lncRNA upstream 190183 1727050 ~ 1732110 (+) True XLOC_019977
TCONS_00041847 lncRNA upstream 256822 1660187 ~ 1665471 (+) False XLOC_019971
TCONS_00039787 lncRNA upstream 538224 1377331 ~ 1384069 (+) True XLOC_019947
TCONS_00042011 lncRNA upstream 593143 1317461 ~ 1329150 (+) False XLOC_019943
TCONS_00039862 lncRNA downstream 27804 1953150 ~ 1954788 (+) False XLOC_019999
TCONS_00039863 lncRNA downstream 28475 1953821 ~ 1960320 (+) False XLOC_019999
TCONS_00039864 lncRNA downstream 28966 1954312 ~ 1960320 (+) False XLOC_019999
TCONS_00039868 lncRNA downstream 30166 1955512 ~ 1960158 (+) False XLOC_019999
TCONS_00039867 lncRNA downstream 30166 1955512 ~ 1960320 (+) True XLOC_019999
TCONS_00039852 mRNA upstream 2694 1911269 ~ 1919599 (+) False XLOC_019994
TCONS_00039853 mRNA upstream 2697 1911335 ~ 1919596 (+) True XLOC_019994
TCONS_00039851 mRNA upstream 16235 1904546 ~ 1906058 (+) False XLOC_019993
TCONS_00039850 mRNA upstream 20588 1899142 ~ 1901705 (+) True XLOC_019992
TCONS_00039848 mRNA upstream 24541 1882942 ~ 1897752 (+) False XLOC_019990
TCONS_00039855 mRNA downstream 5243 1930589 ~ 1935844 (+) False XLOC_019996
TCONS_00039857 mRNA downstream 15249 1940595 ~ 1945452 (+) True XLOC_019997
TCONS_00039859 mRNA downstream 22148 1947494 ~ 1949027 (+) True XLOC_019998
TCONS_00039860 mRNA downstream 27750 1953096 ~ 1960772 (+) False XLOC_019999
TCONS_00039869 mRNA downstream 106677 2032023 ~ 2034151 (+) True XLOC_020001
TCONS_00039847 other upstream 41623 1878149 ~ 1880670 (+) True XLOC_019991
TCONS_00039846 other upstream 42313 1878147 ~ 1879980 (+) False XLOC_019991
TCONS_00039830 other upstream 194803 1725568 ~ 1727490 (+) False XLOC_019977
TCONS_00039823 other upstream 256822 1661266 ~ 1665471 (+) True XLOC_019971
TCONS_00039822 other upstream 260947 1660415 ~ 1661346 (+) False XLOC_019971
TCONS_00039856 other downstream 5255 1930601 ~ 1935050 (+) True XLOC_019996
TCONS_00039858 other downstream 21330 1946676 ~ 1948949 (+) False XLOC_019998
TCONS_00039861 other downstream 27792 1953138 ~ 1953936 (+) False XLOC_019999
TCONS_00039865 other downstream 28998 1954344 ~ 1960158 (+) False XLOC_019999
TCONS_00039866 other downstream 30150 1955496 ~ 1960320 (+) False XLOC_019999

Expression Profile

//