RNA id: TU1111624


Basic Information

Item Value
RNA id TU1111624
length 202
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G976078
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39110416 ~ 39110617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATATACAGTTgacgtcggaagtttatatacaccttagccaaatacatttaaactcagtttttcgcaattcctaacatttaatcatagcaaaaattccctgtcataggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaataatagaagagagtgatttatttcagcttttatttatttcatcacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1111620 lncRNA upstream 4007 39106162 ~ 39106409 (+) True G976074
TU1111601 lncRNA upstream 22677 39087458 ~ 39087739 (+) True G976055
TU1111600 lncRNA upstream 23161 39086926 ~ 39087255 (+) True G976054
TU1111567 lncRNA upstream 48078 39061971 ~ 39062338 (+) True G976024
TU1111559 lncRNA upstream 52983 39057052 ~ 39057433 (+) True G976016
TU1111631 lncRNA downstream 9339 39119956 ~ 39120180 (+) True G976085
TU1111636 lncRNA downstream 16058 39126675 ~ 39126997 (+) True G976090
TU1111646 lncRNA downstream 33936 39144553 ~ 39144853 (+) True G976100
TU1111647 lncRNA downstream 34610 39145227 ~ 39145697 (+) True G976101
TU1111606 lncRNA downstream 43547 39154164 ~ 39155730 (+) True G976060
XM_021620840.2 mRNA upstream 105830 38989854 ~ 39004586 (+) True LOC110535680
XM_021620837.2 mRNA upstream 156063 38951292 ~ 38954353 (+) True LOC110535679
XM_021620839.2 mRNA upstream 156190 38951292 ~ 38954226 (+) False LOC110535679
XR_005034791.1 mRNA upstream 270356 38838167 ~ 38840060 (+) True LOC118937441
XR_005034790.1 mRNA upstream 275440 38833162 ~ 38834976 (+) True LOC118937440
XM_021620843.2 mRNA downstream 89119 39199736 ~ 39223071 (+) False LOC110535681
XM_036935441.1 mRNA downstream 89560 39200177 ~ 39237015 (+) False LOC110535681
XM_021620846.2 mRNA downstream 89563 39200180 ~ 39236432 (+) False LOC110535681
XM_021620847.2 mRNA downstream 89563 39200180 ~ 39237016 (+) False LOC110535681
XM_021620842.2 mRNA downstream 89566 39200183 ~ 39223071 (+) False LOC110535681
TU1111560 other upstream 52405 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1047316 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1067086 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1071705 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 1275081 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 1657219 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1892459 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2967875 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 3417903 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 3521207 42631824 ~ 42636709 (+) False G980019

Expression Profile