RNA id: TU1112521


Basic Information

Item Value
RNA id TU1112521
length 213
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G976911
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 39799680 ~ 39799892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTAGATTTCAGTATTAGGAAGCTGCAGAAAGACAAAGATTCTGGAGTGAAGGATTCTTTTATGGTAAACAGGTGGAAAAAATGTGAGGATTTGGCAATAGGATTTTCTCTCTGGAACCATAGGTACTTGGATTTGTGAAACAGGATTAGTTGGTGTGTAATAATATGGATGCTGTGGGGGTAGACTAAActctggtgtgtgtgagtgagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112336 lncRNA upstream 106554 39692863 ~ 39693126 (+) True G976733
TU1112325 lncRNA upstream 125051 39674362 ~ 39674629 (+) True G976722
TU1112322 lncRNA upstream 128045 39671429 ~ 39671635 (+) True G976719
TU1112317 lncRNA upstream 132343 39667070 ~ 39667337 (+) True G976714
TU1111971 lncRNA upstream 165078 39634368 ~ 39634602 (+) True G976396
TU1112533 lncRNA downstream 7906 39807798 ~ 39808057 (+) True G976922
TU1112536 lncRNA downstream 9017 39808909 ~ 39809141 (+) True G976925
TU1112546 lncRNA downstream 14173 39814065 ~ 39814607 (+) True G976935
TU1112587 lncRNA downstream 49202 39849094 ~ 39849410 (+) True G976960
TU1112604 lncRNA downstream 59824 39859716 ~ 39860089 (+) True G976977
XM_036935458.1 mRNA upstream 12393 39694910 ~ 39787287 (+) False LOC110535018
XM_036935457.1 mRNA upstream 12393 39694911 ~ 39787287 (+) False LOC110535018
XM_036935460.1 mRNA upstream 12393 39694911 ~ 39787287 (+) False LOC110535018
XM_036935461.1 mRNA upstream 12393 39694911 ~ 39787287 (+) False LOC110535018
XM_036935462.1 mRNA upstream 12393 39694911 ~ 39787287 (+) False LOC110535018
XR_002475491.2 mRNA downstream 36314 39836206 ~ 39837832 (+) True LOC110536621
XM_021620862.2 mRNA downstream 141698 39941590 ~ 39949172 (+) True LOC110535689
XM_021620863.2 mRNA downstream 180816 39980708 ~ 39982968 (+) False LOC110535690
XM_021620865.2 mRNA downstream 180844 39980736 ~ 39982968 (+) False LOC110535690
XM_021620864.2 mRNA downstream 180863 39980755 ~ 39982968 (+) True LOC110535690
TU1111560 other upstream 741669 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 1736580 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 1756350 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 1760969 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 1964345 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 967944 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 1203184 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 2278600 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2728628 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2831932 42631824 ~ 42636709 (+) False G980019

Expression Profile