RNA id: TU1112777


Basic Information

Item Value
RNA id TU1112777
length 227
lncRNA type intronic
GC content 0.50
exon number 1
gene id G977142
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40083465 ~ 40083691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAATGGCTTCAACTTGCCTTATGTAACTCACAGCCATATTGTTCTAGTTTGTCTGCAGCCATTATCTTGGCTCCGTGTTGGTGGACTTTTGTTTCACTCTCACTcgctcttgctcgctctctctcgaccaGTACGTTTTGAAGTGGGCCATCTTGGTTGTGTGAGTGGGTGTATGGTTCCTCATTGCTGCCATGGTCTCTCCTGCCTAGGGCCTGCTCCATCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112760 lncRNA upstream 22665 40060531 ~ 40060800 (+) True G977125
TU1112757 lncRNA upstream 25944 40057202 ~ 40057521 (+) True G977122
TU1112756 lncRNA upstream 26403 40056851 ~ 40057062 (+) True G977121
TU1112755 lncRNA upstream 26866 40056391 ~ 40056599 (+) True G977120
TU1112750 lncRNA upstream 39410 40043763 ~ 40044055 (+) True G977115
TU1112781 lncRNA downstream 19540 40103231 ~ 40103457 (+) True G977146
TU1112791 lncRNA downstream 43294 40126985 ~ 40127246 (+) True G977156
TU1113055 lncRNA downstream 99896 40183587 ~ 40183816 (+) True G977403
TU1113057 lncRNA downstream 100756 40184447 ~ 40184684 (+) True G977405
TU1113061 lncRNA downstream 104225 40187916 ~ 40188188 (+) True G977409
XM_036935465.1 mRNA upstream 44711 40015466 ~ 40038754 (+) False LOC110535019
XM_036935466.1 mRNA upstream 44711 40015466 ~ 40038754 (+) False LOC110535019
XM_036935467.1 mRNA upstream 44711 40017470 ~ 40038754 (+) True LOC110535019
LOC118937386 mRNA upstream 68724 40005053 ~ 40014741 (+) True LOC118937386
XR_005034626.1 mRNA upstream 82837 39998465 ~ 40000628 (+) True LOC118937349
XM_021620870.2 mRNA downstream 104630 40188321 ~ 40739490 (+) False grid2
XR_002475295.2 mRNA downstream 104630 40188321 ~ 40741589 (+) False grid2
XM_021620869.2 mRNA downstream 104631 40188322 ~ 40743994 (+) True grid2
XM_021622364.2 mRNA downstream 665044 40748735 ~ 40750507 (+) True LOC110536622
XM_021620874.2 mRNA downstream 703636 40787327 ~ 40814363 (+) False LOC110535695
TU1111560 other upstream 1025454 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 2020365 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 2040135 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 2044754 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2248130 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 684145 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 919385 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 1994801 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2444829 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2548133 42631824 ~ 42636709 (+) False G980019

Expression Profile