RNA id: TU1112791


Basic Information

Item Value
RNA id TU1112791
length 262
lncRNA type intronic
GC content 0.37
exon number 1
gene id G977156
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 40126985 ~ 40127246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctatttaaaaaaataaaaataaaaaaagtgaaataaaatcaaataaaaatccaCAAACAGCACAAAGTCCATTAATCATGTTGTTTGCCACTGCcatagctgcagttgtggtgctgTGCCCCCCATCTAAAGCCAGACTGAACCCCGCTCAATATGATATTTTCAATTAAGAAGTTTTTTGTGAGTTCTCTAGGGATTTATAGACTTTGGCCAGGATAGGGAGTTTAGAGATAGGACGATATTTATTAGCctctgaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1112781 lncRNA upstream 23528 40103231 ~ 40103457 (+) True G977146
TU1112777 lncRNA upstream 43294 40083465 ~ 40083691 (+) True G977142
TU1112760 lncRNA upstream 66185 40060531 ~ 40060800 (+) True G977125
TU1112757 lncRNA upstream 69464 40057202 ~ 40057521 (+) True G977122
TU1112756 lncRNA upstream 69923 40056851 ~ 40057062 (+) True G977121
TU1113055 lncRNA downstream 56341 40183587 ~ 40183816 (+) True G977403
TU1113057 lncRNA downstream 57201 40184447 ~ 40184684 (+) True G977405
TU1113061 lncRNA downstream 60670 40187916 ~ 40188188 (+) True G977409
TU1113920 lncRNA downstream 635843 40763089 ~ 40763349 (+) True G978246
TU1113993 lncRNA downstream 731698 40858944 ~ 40862847 (+) True G978312
XM_036935465.1 mRNA upstream 88231 40015466 ~ 40038754 (+) False LOC110535019
XM_036935466.1 mRNA upstream 88231 40015466 ~ 40038754 (+) False LOC110535019
XM_036935467.1 mRNA upstream 88231 40017470 ~ 40038754 (+) True LOC110535019
LOC118937386 mRNA upstream 112244 40005053 ~ 40014741 (+) True LOC118937386
XR_005034626.1 mRNA upstream 126357 39998465 ~ 40000628 (+) True LOC118937349
XM_021620870.2 mRNA downstream 61075 40188321 ~ 40739490 (+) False grid2
XR_002475295.2 mRNA downstream 61075 40188321 ~ 40741589 (+) False grid2
XM_021620869.2 mRNA downstream 61076 40188322 ~ 40743994 (+) True grid2
XM_021622364.2 mRNA downstream 621489 40748735 ~ 40750507 (+) True LOC110536622
XM_021620874.2 mRNA downstream 660081 40787327 ~ 40814363 (+) False LOC110535695
TU1111560 other upstream 1068974 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 2063885 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 2083655 38042706 ~ 38043330 (+) False LOC110535015
TU1109354 other upstream 2088274 38020449 ~ 38038711 (+) False LOC110535015
TU1109337 other upstream 2291650 37831521 ~ 37835335 (+) True lztfl1
TU1113929 other downstream 640590 40767836 ~ 40768229 (+) True G978255
TU1114082 other downstream 875830 41003076 ~ 41016088 (+) True G978396
TU1115468 other downstream 1951246 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 2401274 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 2504578 42631824 ~ 42636709 (+) False G980019

Expression Profile