RNA id: TU1115454


Basic Information

Item Value
RNA id TU1115454
length 329
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G979675
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42065264 ~ 42065592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Aaaatcagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacatactgactcaactccagccactttaataatggaaaaatgtatcactagccactttaaacaatgccacttaatataatgtttacataccctacattactcatctcaaacatatactgtatactgtactctgtaccatctactgcatcttgtcatctttatgtaatacatgtatcactagccactttaaacaatgccacttttatatgtttacataccctacattactcatctcatatgtatatactgtattctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1115445 lncRNA upstream 3981 42060152 ~ 42061283 (+) True G979667
TU1115442 lncRNA upstream 9795 42055169 ~ 42055469 (+) True G979664
TU1115439 lncRNA upstream 10770 42054273 ~ 42054494 (+) True G979661
TU1115401 lncRNA upstream 42353 42022685 ~ 42022911 (+) True G979623
TU1115398 lncRNA upstream 50511 42014527 ~ 42014753 (+) True G979620
TU1115463 lncRNA downstream 6275 42071867 ~ 42072359 (+) True G979684
TU1115473 lncRNA downstream 19142 42084734 ~ 42085076 (+) True G979694
TU1115475 lncRNA downstream 27742 42093334 ~ 42093546 (+) True G979696
TU1115478 lncRNA downstream 37668 42103260 ~ 42103503 (+) True G979699
TU1115485 lncRNA downstream 56901 42122493 ~ 42122692 (+) True G979706
XR_005034632.1 mRNA upstream 304411 41715130 ~ 41760853 (+) True LOC118937354
XR_005034795.1 mRNA upstream 366014 41669796 ~ 41699250 (+) True LOC118937445
XR_005034631.1 mRNA upstream 433223 41626277 ~ 41632041 (+) True LOC118937352
XM_036935486.1 mRNA upstream 460549 41599317 ~ 41604715 (+) False LOC110535708
XM_036935489.1 mRNA downstream 80408 42146000 ~ 42156152 (+) False LOC110535709
XM_021620900.2 mRNA downstream 83902 42149494 ~ 42156152 (+) False LOC110535709
XM_021620899.2 mRNA downstream 83906 42149498 ~ 42157026 (+) True LOC110535709
XM_021620908.2 mRNA downstream 526416 42592008 ~ 42629083 (+) False slf1
XM_021620907.2 mRNA downstream 526417 42592009 ~ 42629731 (+) False slf1
TU1114082 other upstream 1049176 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 1297035 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 3007253 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 4002164 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 4021934 38042706 ~ 38043330 (+) False LOC110535015
TU1115468 other downstream 12900 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 462928 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 566232 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 1594782 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 2215333 44280925 ~ 44285969 (+) True G982236

Expression Profile