RNA id: TU1115463


Basic Information

Item Value
RNA id TU1115463
length 493
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G979684
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42071867 ~ 42072359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCATAATGGTGCTTTCACAGTAGCTTTGTGACTTTCATGGATACGGCCTGCATGGTTGCCGCTCATTCTTTTGGGGGTAaacgtacactgagtatacactgagtatacaaaacattaagaacacctgctctttccttgacatagactgaccagctgaatccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggaggagacaggttaaagaaggatttttaagccttgagacaattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaaggttgaaatgcctttgaatggggtatggtaataggtgcctggagcactggtttgagtgtgtcaataactgcaacgctgctgggtcttTCACGCTCAAACGTTTCCtgcgtgtatcaagaatggtccaccacccaaaggacatcaagtcaacttgacacaactatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1115454 lncRNA upstream 6275 42065264 ~ 42065592 (+) True G979675
TU1115445 lncRNA upstream 10584 42060152 ~ 42061283 (+) True G979667
TU1115442 lncRNA upstream 16398 42055169 ~ 42055469 (+) True G979664
TU1115439 lncRNA upstream 17373 42054273 ~ 42054494 (+) True G979661
TU1115401 lncRNA upstream 48956 42022685 ~ 42022911 (+) True G979623
TU1115473 lncRNA downstream 12375 42084734 ~ 42085076 (+) True G979694
TU1115475 lncRNA downstream 20975 42093334 ~ 42093546 (+) True G979696
TU1115478 lncRNA downstream 30901 42103260 ~ 42103503 (+) True G979699
TU1115485 lncRNA downstream 50134 42122493 ~ 42122692 (+) True G979706
TU1115486 lncRNA downstream 51224 42123583 ~ 42124415 (+) True G979707
XR_005034632.1 mRNA upstream 311014 41715130 ~ 41760853 (+) True LOC118937354
XR_005034795.1 mRNA upstream 372617 41669796 ~ 41699250 (+) True LOC118937445
XR_005034631.1 mRNA upstream 439826 41626277 ~ 41632041 (+) True LOC118937352
XM_036935486.1 mRNA upstream 467152 41599317 ~ 41604715 (+) False LOC110535708
XM_036935489.1 mRNA downstream 73641 42146000 ~ 42156152 (+) False LOC110535709
XM_021620900.2 mRNA downstream 77135 42149494 ~ 42156152 (+) False LOC110535709
XM_021620899.2 mRNA downstream 77139 42149498 ~ 42157026 (+) True LOC110535709
XM_021620908.2 mRNA downstream 519649 42592008 ~ 42629083 (+) False slf1
XM_021620907.2 mRNA downstream 519650 42592009 ~ 42629731 (+) False slf1
TU1114082 other upstream 1055779 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 1303638 40767836 ~ 40768229 (+) True G978255
TU1111560 other upstream 3013856 39057676 ~ 39058011 (+) True G976017
TU1109485 other upstream 4008767 38057798 ~ 38063100 (+) True G974184
TU1109353 other upstream 4028537 38042706 ~ 38043330 (+) False LOC110535015
TU1115468 other downstream 6133 42078492 ~ 42078855 (+) True G979689
TU1115777 other downstream 456161 42528520 ~ 42533308 (+) True G979965
TU1115850 other downstream 559465 42631824 ~ 42636709 (+) False G980019
TU1117647 other downstream 1588015 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 2208566 44280925 ~ 44285969 (+) True G982236

Expression Profile