RNA id: TU1116019


Basic Information

Item Value
RNA id TU1116019
length 277
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G980175
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42870797 ~ 42871073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCACCGCCCCTATGACTGTgggattgaccttctccctagCATCACGCTGCCCCGGGGACATCTGTACTCTCTGTTGGGAccagagaccaaggctatggagacctacattgggAACTCCCTATCTACAGGATTTATCCGTCCAtctatcccctgtgtatttatacctgtgttctctgtttgtctgttgccagtttgtcttgtttgtcaagtcaaccagcgtttttgtgtctcagctcctgcttttcccagtctccctttttctcgccctccaggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1116015 lncRNA upstream 4337 42866135 ~ 42866460 (+) True G980171
TU1115906 lncRNA upstream 166948 42703568 ~ 42703849 (+) True G980072
TU1115839 lncRNA upstream 234088 42634156 ~ 42636709 (+) False G980019
TU1115842 lncRNA upstream 234088 42634156 ~ 42636709 (+) True G980019
TU1115799 lncRNA upstream 301443 42569102 ~ 42569354 (+) True G979987
TU1116035 lncRNA downstream 17215 42888288 ~ 42888488 (+) True G980191
TU1116038 lncRNA downstream 18151 42889224 ~ 42889433 (+) True G980194
TU1116048 lncRNA downstream 45698 42916771 ~ 42928679 (+) True G980204
TU1116055 lncRNA downstream 48233 42919306 ~ 43029136 (+) True G980209
TU1116052 lncRNA downstream 66861 42937934 ~ 42939080 (+) True G980206
XM_021620910.2 mRNA upstream 9354 42839548 ~ 42861443 (+) True fam81b
XM_021620907.2 mRNA upstream 241066 42592009 ~ 42629731 (+) False slf1
XM_036935492.1 mRNA upstream 241066 42592363 ~ 42629731 (+) True slf1
XM_021620908.2 mRNA upstream 241714 42592008 ~ 42629083 (+) False slf1
XM_021620899.2 mRNA upstream 713771 42149498 ~ 42157026 (+) True LOC110535709
XM_036936306.1 mRNA downstream 286559 43157632 ~ 43208004 (+) True LOC110535025
XM_021620919.2 mRNA downstream 1159465 44030538 ~ 44032621 (+) False LOC110535720
XM_021620920.2 mRNA downstream 1248408 44119481 ~ 44178070 (+) False LOC110535722
XM_021620921.2 mRNA downstream 1248408 44119481 ~ 44178070 (+) False LOC110535722
XM_021620923.2 mRNA downstream 1248408 44119481 ~ 44178070 (+) False LOC110535722
TU1115850 other upstream 234088 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 337489 42528520 ~ 42533308 (+) True G979965
TU1115468 other upstream 791942 42078492 ~ 42078855 (+) True G979689
TU1114082 other upstream 1854709 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 2102568 40767836 ~ 40768229 (+) True G978255
TU1117647 other downstream 789301 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 1409852 44280925 ~ 44285969 (+) True G982236
TU1119620 other downstream 2512334 45383407 ~ 45413082 (+) True LOC110535735
TU1120571 other downstream 3236847 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 3736319 46607392 ~ 46607681 (+) True G985257

Expression Profile