RNA id: TU1116052


Basic Information

Item Value
RNA id TU1116052
length 941
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G980206
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 42937934 ~ 42939080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATCATGCTAGCTTATATTAAAACAATTGTGACCTTACTGTCCCATTGatcaattacatttgATTTGTACATTTATTTTCAAGCTGCATAATTTAGTTATCTACTTTTAACTGTATTTCCTTGATTGCATTTCCTTGTTTGAAGATAGTGTTCAAGAAAGAACGCAAACACAGATCTAGATCGCAATTCAATCTTGAACATCATCTCACTCATTGGCCTTCAGTGCCTTCATCAGAACATTGTGTGCATCATCAGCCAGCTCGTTCAGACACTTCATCAATATGTAGTAGGTTGTACCAATGGAAATCACTGCTGCAGCAATGCTGCCGGCAGCAGGAATGTTACTTAATAGGTACTCAGATGTCGTCAACGCTGTTAGAGCTGCACTTTGAAGCAACTTGACAATCACATCTTTGCCAATTTTTTTTTGGTTCAGTGGTGACTTGAGGACTGCTTTCAGCTCCTCCACCGACACATTCATTCTGTTTGCAAGGCTCTGCAGGGACTCATCATCAAGACCGAAAGCGTGATAGTACTTCTTGATCTCATTTACCAAGATGCTTACATCTACAGCAATGGAAAGGCCTGGGATAGGTAGTACTGCCACAGAGCCAGATACTAAAGCTAGTCTCCACATGTTGGCTTTGAAAGCCTCCTTCTTCCTCTGGTTGATTTTCAGGGTTATATTAGGGATGGACAACAGTAGTACATGCCCCTTGTGGTCAGGAAGCTCTTTCTCCATTGTCTCCTGAAGGTCAGGGAAATCGTAGAGACCTAAGTCAAAACCAGAGATGAGAAAGACCTTAGGAGAGCCCAGACCCTCAAGCCCTGAGGAGCAAAACAAAGTATAGTCAAATACAAACACAGTAACTAGAATATGAAAAAACAAATTCTGTTTGTATTTGTTTAGCAGTAGAAAACattagtatacagtaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1116048 lncRNA upstream 9255 42916771 ~ 42928679 (+) True G980204
TU1116038 lncRNA upstream 48501 42889224 ~ 42889433 (+) True G980194
TU1116035 lncRNA upstream 49446 42888288 ~ 42888488 (+) True G980191
TU1116019 lncRNA upstream 66861 42870797 ~ 42871073 (+) True G980175
TU1116015 lncRNA upstream 71474 42866135 ~ 42866460 (+) True G980171
TU1116101 lncRNA downstream 50069 42989149 ~ 42989509 (+) True G980255
TU1116813 lncRNA downstream 120769 43059849 ~ 43060183 (+) True G980891
TU1116842 lncRNA downstream 140486 43079566 ~ 43079842 (+) True G980920
TU1116875 lncRNA downstream 166789 43105869 ~ 43106192 (+) True G980953
TU1116899 lncRNA downstream 187420 43126500 ~ 43127182 (+) True G980977
XM_021620910.2 mRNA upstream 76491 42839548 ~ 42861443 (+) True fam81b
XM_021620907.2 mRNA upstream 308203 42592009 ~ 42629731 (+) False slf1
XM_036935492.1 mRNA upstream 308203 42592363 ~ 42629731 (+) True slf1
XM_021620908.2 mRNA upstream 308851 42592008 ~ 42629083 (+) False slf1
XM_021620899.2 mRNA upstream 780908 42149498 ~ 42157026 (+) True LOC110535709
XM_036936306.1 mRNA downstream 218552 43157632 ~ 43208004 (+) True LOC110535025
XM_021620919.2 mRNA downstream 1091458 44030538 ~ 44032621 (+) False LOC110535720
XM_021620920.2 mRNA downstream 1180401 44119481 ~ 44178070 (+) False LOC110535722
XM_021620921.2 mRNA downstream 1180401 44119481 ~ 44178070 (+) False LOC110535722
XM_021620923.2 mRNA downstream 1180401 44119481 ~ 44178070 (+) False LOC110535722
TU1115850 other upstream 301225 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 404626 42528520 ~ 42533308 (+) True G979965
TU1115468 other upstream 859079 42078492 ~ 42078855 (+) True G979689
TU1114082 other upstream 1921846 41003076 ~ 41016088 (+) True G978396
TU1113929 other upstream 2169705 40767836 ~ 40768229 (+) True G978255
TU1117647 other downstream 721294 43660374 ~ 43715297 (+) True G981690
TU1118214 other downstream 1341845 44280925 ~ 44285969 (+) True G982236
TU1119620 other downstream 2444327 45383407 ~ 45413082 (+) True LOC110535735
TU1120571 other downstream 3168840 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 3668312 46607392 ~ 46607681 (+) True G985257

Expression Profile