RNA id: TU1120069


Basic Information

Item Value
RNA id TU1120069
length 375
lncRNA type intronic
GC content 0.42
exon number 1
gene id G984002
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 45593339 ~ 45593713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacactcaattagtatttggtagcattgccttcaaattgtttaacttgggtcaaacgttttgggtagccttccacaagcttcccacaataagttttggcccattcctcctgacagagctggtgtaactgagtcaggtttgttggactccttgctcgcacatgctttttcagttctgtccacacattttctatgggatggaggtgagggctttgtgatagccactcaaataccttgactttgttgtccttaaatcattttgccacaactttggaagtattctcggggtcattgtccatttggaagaccaatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120058 lncRNA upstream 13306 45579751 ~ 45580033 (+) True G983991
TU1120056 lncRNA upstream 16007 45577126 ~ 45577332 (+) True G983989
TU1120050 lncRNA upstream 23618 45569462 ~ 45569721 (+) True G983984
TU1120047 lncRNA upstream 26499 45566554 ~ 45566840 (+) True G983981
TU1120041 lncRNA upstream 35248 45557871 ~ 45558091 (+) True G983975
TU1119997 lncRNA downstream 22690 45616403 ~ 45618447 (+) True G983933
TU1120080 lncRNA downstream 29553 45623266 ~ 45624058 (+) True G984013
TU1120320 lncRNA downstream 101454 45695167 ~ 45760702 (+) True G984227
TU1120311 lncRNA downstream 271411 45865124 ~ 45866751 (+) False LOC110535740
TU1120312 lncRNA downstream 271411 45865124 ~ 45865360 (+) True LOC110535740
XR_005034796.1 mRNA upstream 101469 45487141 ~ 45491870 (+) True LOC118937447
XM_036935524.1 mRNA upstream 109135 45449148 ~ 45484204 (+) False LOC110535736
XM_021620952.2 mRNA upstream 109135 45449149 ~ 45484204 (+) False LOC110535736
XM_021620951.2 mRNA upstream 109135 45449151 ~ 45484204 (+) True LOC110535736
LOC110535029 mRNA upstream 145435 45436521 ~ 45447904 (+) True LOC110535029
XM_021620957.2 mRNA downstream 93228 45686941 ~ 45787303 (+) False LOC110535739
XM_036935526.1 mRNA downstream 93228 45686941 ~ 45787303 (+) True LOC110535739
XM_021620959.2 mRNA downstream 226722 45820435 ~ 45865361 (+) False LOC110535740
XM_021620960.2 mRNA downstream 226722 45820435 ~ 45865361 (+) False LOC110535740
XM_036935528.1 mRNA downstream 226722 45820435 ~ 45865361 (+) False LOC110535740
TU1119620 other upstream 180257 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1307370 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 1878042 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 2956630 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 3060031 42528520 ~ 42533308 (+) True G979965
TU1120571 other downstream 514207 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 1013679 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 1253990 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 1329226 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1657599 47251312 ~ 47252236 (+) True G985597

Expression Profile