RNA id: TU1120548


Basic Information

Item Value
RNA id TU1120548
length 1199
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G984406
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 46068004 ~ 46069268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCATTTATTAAAGCTTTGAGTACACGCAACCAACGTGAACAAACATTTGACTTAGCAGCATGTCGTCATAACTAAAACAGAGTATTTGAGTGGGCTTATTTCTGCAAACTGTACAGCCGCTGCTGGTTCAGAGACTTAGAAATATAGGTCCTGTGTTTGCCAATGTTAAATATCCATTCAATTCCAATGTCAATGTCAAACTAAACATGGTTCTCCCAAGCTTAGATAAACACCACTCAAGTACTAGACATGCCATAGCTAATCTGAAACCATCTTGACCGCGAAGCAGAGGTTGGAAATACTTAGCCATTCAATGAACACACTGAATTAGTTGCTAAGGGAAACCGAATCCCCTTAGAATAATGACCACGTACTGCAACTATGTCTTAAATACTTcgtaaaatgtattttgtaataGTGCAACcataaataattattatatgatagatacatatacagtatgtaccagtggaggctgcaaaggggaggacggctcataataaatgGCTGGAATGTAGCGAATGGAATTGAATCAAAGACATGGAATCCATGTTTGATGAATTTGAtaccgctccagtcattaccacgagctcgttctccccaattaaggtgccaccaacctcctgtggtatgtaCTCTTACTATGCAGGAGAATTcaactttctttcttttttacacCATTTCTGAAATTAGAAGATTAATATACGAGGAAATAAGTAGATGAAAAAGGGTACTTATAAACCATGCTAACTGAAATCAGGCTAACTGAACAAGGATGAACGGAAGGTTACTTCATGCTAGCGCAATCGTGAAGGTCAGCATTCTCAAGCCTGGCCCAGATGTACACATTCAGGTGATCATTTTCCAATAAGAGAGCTGATACAAGGTAACCCAGCATAGATACAAATTGACATTTAGGACAAGGATGAAGAAATGCTATGTAAAGGCCCACAGTAACGTATAAGGCAGTGGCTGCTAGtggaaggagaAATGACtaaagagggagggagcagaCACGGAGGGCTTCGGTAGGCGGTAGGGAGAAGTGAGCAGCCTGGTCCTAGATGTCGGAGCCCATCTCTGCACACTGCTTGTCTGATATGTGTGAGGCAAGGGACTCGATGATgtccagcagcagcagctggCTGAGGGACCTCAGGTTGGGGAGCTTGGACACCTtcagaagggggaggggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1120460 lncRNA upstream 7287 45965434 ~ 46060717 (+) True chek2
TU1120493 lncRNA upstream 50226 46008675 ~ 46017778 (+) True G984361
TU1120487 lncRNA upstream 55286 46010437 ~ 46012718 (+) True si:dkey-98f17.5
TU1120469 lncRNA upstream 80172 45971448 ~ 45987832 (+) True G984342
TU1120408 lncRNA upstream 151613 45889438 ~ 45916391 (+) True G984310
TU1120600 lncRNA downstream 66414 46135682 ~ 46136223 (+) True G984439
TU1120647 lncRNA downstream 154439 46223707 ~ 46223979 (+) True G984482
TU1120659 lncRNA downstream 210422 46279690 ~ 46280165 (+) False LOC110535759
TU1120660 lncRNA downstream 212254 46281522 ~ 46282065 (+) True LOC110535759
TU1120698 lncRNA downstream 219956 46289224 ~ 46289425 (+) True G984526
XM_021620975.2 mRNA upstream 56269 45993188 ~ 46011735 (+) False si:dkey-98f17.5
XM_036934617.1 mRNA upstream 101381 45957602 ~ 45966623 (+) False chek2
XM_036934618.1 mRNA upstream 101381 45957683 ~ 45966623 (+) False chek2
XM_036934619.1 mRNA upstream 101381 45957848 ~ 45966623 (+) False chek2
XM_036934620.1 mRNA upstream 101381 45958393 ~ 45966623 (+) False chek2
XM_021620984.2 mRNA downstream 58969 46128237 ~ 46133048 (+) True p2rx2
XM_036935533.1 mRNA downstream 93751 46163019 ~ 46203981 (+) False LOC110535755
XM_036935535.1 mRNA downstream 93751 46163019 ~ 46203981 (+) False LOC110535755
XM_036935537.1 mRNA downstream 93751 46163019 ~ 46203981 (+) False LOC110535755
XM_036935538.1 mRNA downstream 93751 46163019 ~ 46203981 (+) False LOC110535755
TU1119620 other upstream 654922 45383407 ~ 45413082 (+) True LOC110535735
TU1118214 other upstream 1782035 44280925 ~ 44285969 (+) True G982236
TU1117647 other upstream 2352707 43660374 ~ 43715297 (+) True G981690
TU1115850 other upstream 3431295 42631824 ~ 42636709 (+) False G980019
TU1115777 other upstream 3534696 42528520 ~ 42533308 (+) True G979965
TU1120571 other downstream 38652 46107920 ~ 46109940 (+) True G984422
TU1121569 other downstream 538124 46607392 ~ 46607681 (+) True G985257
TU1121722 other downstream 778435 46847703 ~ 46875441 (+) True G985387
TU1121736 other downstream 853671 46922939 ~ 46923827 (+) True G985401
TU1121954 other downstream 1182044 47251312 ~ 47252236 (+) True G985597

Expression Profile