RNA id: TU1135541


Basic Information

Item Value
RNA id TU1135541
length 1624
RNA type TUCP
GC content 0.46
exon number 1
gene id G997824
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 57787468 ~ 57789171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACTCAATAAAACATATACAGATATATACAATATGCAGGAAAACAGACGACTGCACTTTACATAttattaaaaaaagaaaacaaaaaagaaacAGTTCGCACGTTGCCGTCACAGGCCTCCATCTATTGTTTCAGAAATTCAAATTCAACAGAAGCTTTATTTAAAGGTTACAAGATTGCCTAACACACAGCAAATGTTCTCTTATTTTACATGTGCAATACCAATATTCCTTTTTTCAAATCCCTTATTAAATGGTTCCTTGACCTCCCCTACAGTTTACATTGGCTGTATTGTATAACTGTGTTGGAGCCCAAGCTAAATAGAAGAGGAAATGAGTGAAAGAGAGGAATTTGTATTCAGGAATCCCTTTTTGCAGATGCCCACACCAAAAATAaactatttctctctccatctccctcccactCTTCCTCCCCCTGTTTCAGGGTCCAGGCCAGTTCTATTGGACCAGGAGGATGGCCTGGTGAGGTTGTGAGGTACAGTGTCTCAAAAGGTCCAGATCTCATCAGGTTCCTGTGTCTCTGGGTAACAATGGGGTTCCAGGCCTGAGGGAGAGGTCCTGGTGAGAGGgctgctctcctctccctgtacCCCTGAGAGccatgggagggaggaagggctggTTCACACACATATCCTCCAAACTCTGGCTGACAAAGATGACCAGAGTCCCTCAACGGGTGAATATGGGTCAGGGTGGTTCTGCTTGAGGCCATACCCAAGCCCAGTCCCAGTGATCTATACACTAGGCTGGGGGCAGGCATGGTGGGTGGTACCACCTCCAACCCACAGAGAGAACCACGGCTAGGAGGTCACTGAGTACAGGTACAGGGTACAGCTGGTGAGGATGGGGTATTAATCACAGAGCTCCCAAATACTAAGAGACAACTTTCATGTCTAAAGAATGTAACAGAACAGAGACTCAACACTGTTATCCCAATACAGCCAAGGACATTTTGTCTTTCTGTTTTCTCAGTTTTAGTTTGTTCCTTTCCTCCATTGACATTTCTCCTGTTTTcttcaaaaaacaacaaaaaactaaaAGGGTGATTTGAGGTTTCCCAGATGTGGGCACCACTGAATAGAGCCCAAGCTGTATAGTCCAGCGATGcatgagtgagtgtgtatgtatttgtgcccaatagtgtgtgtgagtgtgtgtgagcatgagtgtgtatgtgttgatgtgtgtgtatgagtgtgtatatGTCCTTCTCTCCCTGAACAGGCGAGAGCCAATGCAGACGCCTCATCATCAATACCTttacatcatcctcatcatcaatACCTTTATGTCATCATCAATACCTTTATGTCATCCTCATCATCAATACCTGTATGTCATCCTCATCATCAATACCTTTATATCATCCTCATCATTGCTGTCGTCTTCATTATCATCTGCCTCTgactctctccaccccccccccccctctctctttcttttgatcttccctccatctcctggGCTGCCCTGGTTGTGTTCAGGTCAGGGCAGCCACGAAGGTCCCAAAGCGGTTGGAGATGTCGGAGTGCAGGGAGCGCCAAGAGGAGACGGGCCCCCCTCGGCCCTTACTGTCCCCCAGCTCATCTGTGCAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1135540 lncRNA upstream 1569 57785725 ~ 57785931 (+) True G997823
TU1135539 lncRNA upstream 4056 57782179 ~ 57783444 (+) True G997822
TU1135534 lncRNA upstream 13352 57773806 ~ 57774148 (+) True G997817
TU1135525 lncRNA upstream 41487 57745792 ~ 57746013 (+) True G997808
TU1135512 lncRNA upstream 65021 57722058 ~ 57722479 (+) True G997797
TU1135659 lncRNA downstream 166409 57955532 ~ 57956099 (+) True G997937
TU1135731 lncRNA downstream 302035 58091158 ~ 58091444 (+) True G998001
TU1135733 lncRNA downstream 304487 58093610 ~ 58093826 (+) True G998003
TU1135740 lncRNA downstream 316395 58105518 ~ 58105728 (+) True G998010
TU1135742 lncRNA downstream 318881 58108004 ~ 58108225 (+) True G998012
XR_005034684.1 mRNA upstream 490954 57294321 ~ 57296546 (+) False LOC110536635
XR_005034685.1 mRNA upstream 490954 57294321 ~ 57296546 (+) True LOC110536635
XR_002475497.2 mRNA upstream 493302 57287724 ~ 57294198 (+) True LOC110536634
XR_002475360.2 mRNA upstream 514942 57261546 ~ 57272558 (+) False LOC110536045
XM_021621562.2 mRNA downstream 424120 58213243 ~ 58217300 (+) True LOC110536048
XM_036935892.1 mRNA downstream 573882 58363005 ~ 58378703 (+) False LOC110536052
XM_036935893.1 mRNA downstream 574503 58363626 ~ 58378425 (+) True LOC110536052
XM_021621580.2 mRNA downstream 595715 58384838 ~ 58388397 (+) False LOC110536057
XR_005034686.1 mRNA downstream 595715 58384838 ~ 58388397 (+) False LOC110536057
TU1134758 other upstream 723920 57052109 ~ 57063580 (+) False LOC110536038
TU1134771 other upstream 723920 57052109 ~ 57063580 (+) True LOC110536038
TU1133981 other upstream 1354229 56386519 ~ 56433271 (+) True LOC110536021
TU1133052 other upstream 1754964 56028171 ~ 56032536 (+) True LOC110536010
TU1133037 other upstream 1782633 56002854 ~ 56004867 (+) True G995607
TU1136311 other downstream 512462 58301585 ~ 58302987 (+) False G998557
TU1136312 other downstream 512462 58301585 ~ 58302987 (+) False G998557
TU1136313 other downstream 512462 58301585 ~ 58302987 (+) False G998557
TU1136316 other downstream 512462 58301585 ~ 58302987 (+) False G998557
TU1136319 other downstream 512462 58301585 ~ 58302987 (+) True G998557

Expression Profile