RNA id: TU1136251


Basic Information

Item Value
RNA id TU1136251
length 333
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G998504
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58246226 ~ 58246745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTGGTCCTCCAGCACCTTCTTAGGCGGCCGTACATTAGTGAAGAAGACGTGGAGGAGGTTTCCAGTAGTCTGGGAGTTGATCTGCTCCTTGCTCAAGTAGATGTCTGACACTTTGACAGGCTTGGCTGGTGTGAGGCTGAGCATCTGCTCTGAGTGTGCACAACTCTTGAAGATGTCCATCAGCACGTCTCGTGCACTTGGAACCAACTTGATCTCCTCATTGGTCAGTTCCATCagctcctcctcaccctccaggCTGGATAAGCCAATCAAGTCGCTGCTGTTGAAGAGACTAGCGCGGATCTTTTCCACTTTGGCTCGGGCGCGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136250 lncRNA upstream 178 58245771 ~ 58246048 (+) True G998503
TU1136249 lncRNA upstream 1348 58243995 ~ 58244878 (+) True G998502
TU1136240 lncRNA upstream 11049 58234969 ~ 58235177 (+) True G998493
TU1136232 lncRNA upstream 18647 58227307 ~ 58227579 (+) True G998486
TU1136229 lncRNA upstream 20132 58225852 ~ 58226094 (+) True G998483
TU1136263 lncRNA downstream 10345 58257090 ~ 58257368 (+) True G998515
TU1136337 lncRNA downstream 85747 58332492 ~ 58337916 (+) False G998570
TU1136336 lncRNA downstream 87991 58334736 ~ 58352780 (+) True G998570
TU1136576 lncRNA downstream 324053 58570798 ~ 58571059 (+) True G998784
TU1136578 lncRNA downstream 331200 58577945 ~ 58580187 (+) True G998786
XM_021621562.2 mRNA upstream 28926 58213243 ~ 58217300 (+) True LOC110536048
XR_005034684.1 mRNA upstream 949680 57294321 ~ 57296546 (+) False LOC110536635
XR_005034685.1 mRNA upstream 949680 57294321 ~ 57296546 (+) True LOC110536635
XR_002475497.2 mRNA upstream 952028 57287724 ~ 57294198 (+) True LOC110536634
XR_005034683.1 mRNA upstream 973668 57261548 ~ 57272558 (+) False LOC110536045
XM_036935892.1 mRNA downstream 116260 58363005 ~ 58378703 (+) False LOC110536052
XM_036935893.1 mRNA downstream 116881 58363626 ~ 58378425 (+) True LOC110536052
XM_021621580.2 mRNA downstream 138093 58384838 ~ 58388397 (+) False LOC110536057
XR_005034686.1 mRNA downstream 138093 58384838 ~ 58388397 (+) False LOC110536057
XM_021621581.2 mRNA downstream 138093 58384838 ~ 58388400 (+) True LOC110536057
TU1135544 other upstream 457055 57787468 ~ 57789171 (+) False G997824
TU1135545 other upstream 457055 57787500 ~ 57789171 (+) True G997824
TU1135543 other upstream 457103 57787468 ~ 57789123 (+) False G997824
TU1135541 other upstream 457103 57787500 ~ 57789123 (+) False G997824
TU1134771 other upstream 1182646 57052109 ~ 57063580 (+) True LOC110536038
TU1136311 other downstream 54840 58301585 ~ 58302987 (+) False G998557
TU1136312 other downstream 54840 58301585 ~ 58302987 (+) False G998557
TU1136313 other downstream 54840 58301585 ~ 58302987 (+) False G998557
TU1136316 other downstream 54840 58301585 ~ 58302987 (+) False G998557
TU1136319 other downstream 54840 58301585 ~ 58302987 (+) True G998557

Expression Profile