RNA id: TU1136737



Basic Information


Item Value
RNA id TU1136737
length 216
lncRNA type intronic
GC content 0.44
exon number 1
gene id G998928
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58821337 ~ 58821552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTGAACAGATGGAGAATCCAAAAGGATAGAGTGTTTACAAGCAAGCTGAGGCAGGCAAGGGAGGAAGGATGGTGTTAAATTAGTGACCCATAGTTAATTTCCCCTTTTCCACCTTTTCAGgtcgcacagcaaaatatttaggaGCATATACGAGTAAAATGGTCACACTATAGAGCACTGTTGCCATGGCAACCATGACGTCAACAGCATGCCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1136699 lncRNA upstream 1847 58762891 ~ 58819490 (+) False LOC110536071
TU1136659 lncRNA upstream 97113 58721071 ~ 58724224 (+) True rilpl2
TU1136647 lncRNA upstream 138717 58675749 ~ 58682620 (+) True G998846
TU1136577 lncRNA upstream 236231 58584324 ~ 58585106 (+) True G998785
TU1136578 lncRNA upstream 241150 58577945 ~ 58580187 (+) True G998786
TU1136697 lncRNA downstream 16429 58837981 ~ 58842749 (+) True LOC110536071
TU1136691 lncRNA downstream 33658 58855210 ~ 58857759 (+) True G998885
TU1136695 lncRNA downstream 37845 58859397 ~ 58860258 (+) True G998887
TU1136694 lncRNA downstream 39077 58860629 ~ 58862743 (+) True G998886
TU1136767 lncRNA downstream 73529 58895081 ~ 58895382 (+) True G998957
XM_021621601.2 mRNA upstream 98550 58720940 ~ 58722787 (+) False rilpl2
XM_021621598.2 mRNA upstream 100853 58692093 ~ 58720484 (+) False LOC110536067
XM_021621600.2 mRNA upstream 100853 58692093 ~ 58720484 (+) True LOC110536067
XM_021621599.2 mRNA upstream 102515 58692093 ~ 58718822 (+) False LOC110536067
XM_021621597.2 mRNA upstream 130979 58653646 ~ 58690358 (+) True hip1rb
XM_021621608.2 mRNA downstream 46442 58867994 ~ 58881986 (+) True mob1a
XM_021621604.2 mRNA downstream 62208 58883760 ~ 58889515 (+) True LOC110536072
XM_036935929.1 mRNA downstream 68748 58890300 ~ 58955743 (+) False smtnb
XM_036935928.1 mRNA downstream 68749 58890301 ~ 58951234 (+) False smtnb
XM_036935922.1 mRNA downstream 68749 58890301 ~ 58955743 (+) False smtnb
TU1136311 other upstream 518350 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 542349 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 542349 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 542349 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 542376 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 542376 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile