RNA id: TU1136691


Basic Information

Item Value
RNA id TU1136691
length 2550
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G998885
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58855210 ~ 58857759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttattgtatgctgtagagttaagatatcccttcactggaactaagggaccgatcccaaaccatgaaaaacagccccagaccattattactcctccaccaaactttacagttggcactatgcatttgggcaggtaacGTTGTCCTGGCGTCCGCCAAACCAAGATTCATCTGTCTGACTaccagatagtgaagcgtgattcatcactccagagtacGTGTTGCCAaagctttacaccacaccagccgactcttggcattgcgcatggtgattttaggcaaAACCTatttcataaagctcccgacgaacagtttgATTCGATTTTTACGTTCTACACGCTCTAGCACTCGGCGGCCCCGTTCTTGTGAGCTtgagtggcctaccactttgcggctgagccgttgttgctccttgaggtttccccttcacaataacagcacttacagttgaccggagcagctctagcagggcagagatttgacgaactgacttgtgtgaaggtttgtctatggagattgcatggctgtttaCTCAATtttctacacctgtcagcaacgggtatggctgaaatagccgaagacactaatttgaagaggtgtctacatacttttgtatatatagtgtattttgaAAGTCAATCACTTCCTGAGCTGTAAATGAGGCATTCAATGTTATTGAGCACATAGACAATACTATTTAGGTTCAGTTCGGAGTTATTTGTTGATGCCTCCGATGAAAAGACTGTAGATATTTGTAATAATATGCTTTGGAAAGAAGGAACATACAGTAGAGTTAGTGATTAATCTTAGGTTTATTCATGCAAATTATGTTTACTTCTTCCCTGTTTCAAAACTGTGTAGCACTATGACTGTAATGGACCACGGAGTACTGAAATGTTAGTGAGAAGGTGAAATGTTACCCACAATCATGCCACATCAGCAGATCCACCATATAGAAAGAATGCCACAATGCATTGACAATCAGTTAGGAAGGCACATGCagcagcagagacagatcctCGTGCTAACACACTCACAAAATGTCTAGGTGCCGTGTGATGAGACATACGGGTAGAAACATTTTCAAAGCACATGATGATCATAGCAAATTGTTTAGACAAATGGGATCTTGGTTGAACGGTCATTACATTTCTGGTGTGATCCAGGGACAGCAAGGAAGACAGTGTGAGGGGTGTATGTGGAGGGAGGACCATCACGGTGAAGTGGGGTCCTCGCTATGCATACAGATTGCTCTGGTAGGGAATGAATGAGGCATCAGGCTGTCTatagccctgtttatacctggtacTAACATGTGCCCCAAGTCCTGATCtggtccacattctgattgtgcccacattttcagaTGGGTGTAGACTATtaaaagacacattgtgatcagatcttcctgaCCCCCTCTGGAGGTAGTTAGGCACGCACTGTGTCTGGATATCAACCAAGTGAAAGCAGATATGGATGGTCAAACCATTTAAATCATTATGCCAGcctctaaaatcattgacaggtaGCACAAGTGACTTATGGCATCagtaaataaatgtaaataaacatttaatttgtattattttgaaagaatatcTCTCAAATACTTCGCATACAGGGAGGCATCAGCTAATCTGGTCACAGTACGGACacgagctgggcgatatggacaaaaatcTATATTACGATAAATTGACAAAATTATCACGTTAACGATAAGTTGAATGAAATGTATAAGCACCAGTAATTATTTTACCCTGTCAACTACCCCTACAACTTTGAATGTTATCAATTGTTCCATTAGCAATATTAGCAGACAGGCCTATTTCATTACAACTTCACATTCCTCTAGTAAAAGGCTACTTAGCGTTATCAGTCCTCGATAAACTGAATATTATCGAAACCGACCatttatcgtcccagctctagtAGACACGACTAACATTAAGAGTGATTGGATCACCCAACTCACATGTTAGAGCAAGGTTTACATGAGGCTATTGTGAACCCAATGTTCTAGAATCCTTGCTTTACCACCAATTCATCTCATACATATAATATGAGATCATGCTATTCCTGTCCATTGCCCTACTATAGGCATATTTCAGGGTGACCCAGAAAGCATCGCCCCAAATACACATGAACATGCAACAGGCATGGTAAAGGATGCAGTCAGTTGAGCTGGAAGGGCTTGTGTTGTGAATCAATGCCGTTGTAACTGATACTTTGGGCTACGAGTCACTGTTCATATGATATGCTTGACCTTTTTTAAAAGTCGCTCATAACTATGGGGAACCCATATGGATTTTCTGTAGACAACACGGAGTCTTTCTGTGCATCCTAACAGTGAAATTGGAGAAGACTGGTTAGCACATCCAGCTAAAAGAAAACATACACCCCTCTAACAATTATTACATGGCTGCTCTTTAAAGCATCGTCCTGCTCCAGAGATACTGTATCAGTCAACTGGACATTGACACCCCAAGAATGTAAAGATATTGTGCAATCATCAGTTAAACTCAGACACATCTGGACAAAGACATTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1136697 lncRNA upstream 12461 58837981 ~ 58842749 (+) True LOC110536071
TU1136737 lncRNA upstream 33658 58821337 ~ 58821552 (+) True G998928
TU1136699 lncRNA upstream 35720 58762891 ~ 58819490 (+) False LOC110536071
TU1136659 lncRNA upstream 130986 58721071 ~ 58724224 (+) True rilpl2
TU1136647 lncRNA upstream 172590 58675749 ~ 58682620 (+) True G998846
TU1136695 lncRNA downstream 1638 58859397 ~ 58860258 (+) True G998887
TU1136694 lncRNA downstream 2870 58860629 ~ 58862743 (+) True G998886
TU1136767 lncRNA downstream 37322 58895081 ~ 58895382 (+) True G998957
TU1136781 lncRNA downstream 58696 58916455 ~ 58916674 (+) True G998970
TU1136759 lncRNA downstream 147709 59005468 ~ 59006695 (+) True G998949
XM_036935919.1 mRNA upstream 3891 58762601 ~ 58851319 (+) False LOC110536071
XM_036935920.1 mRNA upstream 3891 58762601 ~ 58851319 (+) False LOC110536071
XM_021621601.2 mRNA upstream 132423 58720940 ~ 58722787 (+) False rilpl2
XM_021621598.2 mRNA upstream 134726 58692093 ~ 58720484 (+) False LOC110536067
XM_021621600.2 mRNA upstream 134726 58692093 ~ 58720484 (+) True LOC110536067
XM_021621608.2 mRNA downstream 10235 58867994 ~ 58881986 (+) True mob1a
XM_021621604.2 mRNA downstream 26001 58883760 ~ 58889515 (+) True LOC110536072
XM_036935929.1 mRNA downstream 32541 58890300 ~ 58955743 (+) False smtnb
XM_036935928.1 mRNA downstream 32542 58890301 ~ 58951234 (+) False smtnb
XM_036935922.1 mRNA downstream 32542 58890301 ~ 58955743 (+) False smtnb
TU1136311 other upstream 552223 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 506142 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 506142 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 506142 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 506169 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 506169 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile