RNA id: TU1136695



Basic Information


Item Value
RNA id TU1136695
length 695
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G998887
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58859397 ~ 58860258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGATCTTCTGTGCAATCATCACTCTGCCACAACTCCAGGAAGGGCTGGGGGGTGGTGCCTACAGGCTGAGGGGGGGCTGGAGGGGGCATCAAATCTACAAGCAGGGATGCTCTTCTTTCTTCCAATTTCTttatcttcttctttttcttcttctccaaTTTCATCTCTTTCTTCAACTTTCTTTTCTTCTTCTTTAACTTCTTCTTGAATTTTTTCCTTTTCCTTTCCTTCCTCTTGGACTTTTCGTCACttgatgaggaggatgaggaggaggaagaagagctTGACGAGGAAGATGAGGAACttctttttttcattttcttcttcccTTTCCGATCTTGGCTCTTGCTGAGGGGACGTGAGGCTTTCTTTGAAGGGGTCGGACTCGCACTGCTGCTGGACGATGAGGAAGACGAAGAAGAGGAATGTCTTCGCTTTTTCTTCTTGGATAATTTTTTCTCTCCGACTTGTCTGCTCGTGCTCTTGGTCTTATCCGCGGAACTGTCGCGCGATCTACTGCGCTCCATAATCGAAAATGTATGCTAGGGCAATCAATTAATCGTATTCCTTTAAAACTGTACTGGAGATTCTGTAAATCAATTTAGAAATACTTTGCTAACTACAGCTAAAAATAAGTGGCGACAAAACATGTCCACCCCAGATAAATAGGTTGTGCAGCTGTTTTTATTCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1136691 lncRNA upstream 1638 58855210 ~ 58857759 (+) True G998885
TU1136697 lncRNA upstream 16648 58837981 ~ 58842749 (+) True LOC110536071
TU1136737 lncRNA upstream 37845 58821337 ~ 58821552 (+) True G998928
TU1136699 lncRNA upstream 39907 58762891 ~ 58819490 (+) False LOC110536071
TU1136659 lncRNA upstream 135173 58721071 ~ 58724224 (+) True rilpl2
TU1136694 lncRNA downstream 371 58860629 ~ 58862743 (+) True G998886
TU1136767 lncRNA downstream 34823 58895081 ~ 58895382 (+) True G998957
TU1136781 lncRNA downstream 56197 58916455 ~ 58916674 (+) True G998970
TU1136759 lncRNA downstream 145210 59005468 ~ 59006695 (+) True G998949
TU1137164 lncRNA downstream 165135 59025393 ~ 59025692 (+) True G999301
XM_036935919.1 mRNA upstream 8078 58762601 ~ 58851319 (+) False LOC110536071
XM_036935920.1 mRNA upstream 8078 58762601 ~ 58851319 (+) False LOC110536071
XM_021621601.2 mRNA upstream 136610 58720940 ~ 58722787 (+) False rilpl2
XM_021621598.2 mRNA upstream 138913 58692093 ~ 58720484 (+) False LOC110536067
XM_021621608.2 mRNA downstream 7736 58867994 ~ 58881986 (+) True mob1a
XM_021621604.2 mRNA downstream 23502 58883760 ~ 58889515 (+) True LOC110536072
XM_036935929.1 mRNA downstream 30042 58890300 ~ 58955743 (+) False smtnb
XM_036935928.1 mRNA downstream 30043 58890301 ~ 58951234 (+) False smtnb
XM_036935922.1 mRNA downstream 30043 58890301 ~ 58955743 (+) False smtnb
TU1136311 other upstream 556410 58301585 ~ 58302987 (+) False G998557
TU1137372 other downstream 503643 59363901 ~ 59371176 (+) False LOC110536086
TU1137377 other downstream 503643 59363901 ~ 59371295 (+) False LOC110536086
TU1137378 other downstream 503643 59363901 ~ 59371409 (+) False LOC110536086
TU1137371 other downstream 503670 59363928 ~ 59371176 (+) False LOC110536086
TU1137373 other downstream 503670 59363928 ~ 59371409 (+) False LOC110536086

Expression Profile